C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pinin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021381 Pnn-201 ENSMUSG00000020994 10090 + 12:59066919-59074017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021381
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021381 11.360±4.10 13.413±5.92 25.669±0.94 32.375±6.39 8.950±2.97 17.637±2.04 5.324±0.95 8.651±1.10 22.221±14.45 18.812±0.45 8.139±0.45 31.907±11.62 28.530±12.53 14.366±3.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VY CIL_0003VY_0002 CGP 12:59043093-59074017

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0016020 IEA membrane
GO:0016607 IDA nuclear speck
GO:0035145 IEA exon-exon junction complex
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216832 PNN-001 protein_coding Homo_sapiens 0 3823
ENST00000553331 PNN-004 protein_coding Homo_sapiens 0 507
ENST00000554117 PNN-002 retained_intron Homo_sapiens 0 252
ENST00000554902 PNN-006 retained_intron Homo_sapiens 0 778
ENST00000556530 PNN-003 protein_coding Homo_sapiens 0 505
ENST00000557680 PNN-005 processed_transcript Homo_sapiens 0 736

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