C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: galactosylceramidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021390 Galc-201 ENSMUSG00000021003 10090 - 12:98202304-98259459 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021390
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021390 6.111±1.32 6.294±1.60 3.744±0.13 5.798±0.62 4.607±1.11 3.049±0.50 2.052±0.54 24.836±1.53 1.566±0.52 6.359±0.44 0.988±0.32 11.870±1.92 2.708±0.78 7.027±2.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JI CIL_0002JI_0002 CGP 12:95692226-98259459
CIL_0004KM CIL_0004KM_0002 CGP 12:98202304-98276624

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004336 IMP galactosylceramidase activity
GO:0005739 IDA mitochondrion
GO:0005764 TAS lysosome
GO:0005975 IEA carbohydrate metabolic process
GO:0006683 IMP galactosylceramide catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261304 GALC-001 protein_coding Homo_sapiens 0 1949
ENST00000393568 GALC-005 protein_coding Homo_sapiens 0 1585
ENST00000393569 GALC-002 protein_coding Homo_sapiens 0 1716
ENST00000474294 GALC-003 retained_intron Homo_sapiens 0 1238
ENST00000544807 GALC-007 protein_coding Homo_sapiens 0 1598
ENST00000554372 GALC-009 nonsense_mediated_decay Homo_sapiens 0 385
ENST00000554916 GALC-011 processed_transcript Homo_sapiens 0 616
ENST00000555000 GALC-008 nonsense_mediated_decay Homo_sapiens 0 1114
ENST00000555956 GALC-015 retained_intron Homo_sapiens 2.8026e-45 185
ENST00000556261 GALC-012 processed_transcript Homo_sapiens 0 342
ENST00000556879 GALC-010 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000557316 GALC-006 nonsense_mediated_decay Homo_sapiens 0 1072
ENST00000557520 GALC-016 processed_transcript Homo_sapiens 0 318
ENST00000622264 GALC-017 protein_coding Homo_sapiens 0 1238

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