C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: atlastin GTPase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021466 Atl1-201 ENSMUSG00000021066 10090 + 12:69893105-69964085 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungTestisENSMUST00000021466
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Testis
ENSMUST00000021466 1.340±0.01 2.949±0.00 3.461±0.10 21.943±1.81 1.353±0.22 2.631±0.00 1.165±0.13 0.553±0.13 1.764±0.02 12.042±5.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005HO CIL_0005HO_0003 CGP 12:69746848-69893200
CIL_0005HD CIL_0005HD_0003 CGP 12:69803750-69964085

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000137 ISS Golgi cis cisterna
GO:0003924 ISS GTPase activity
GO:0005515 IEA protein binding
GO:0005525 ISS GTP binding
GO:0005783 ISS endoplasmic reticulum
GO:0005789 ISS endoplasmic reticulum membrane
GO:0005794 ISS Golgi apparatus
GO:0006184 IEA GTP catabolic process
GO:0007029 ISS endoplasmic reticulum organization
GO:0007409 ISS axonogenesis
GO:0016021 ISS integral component of membrane
GO:0042802 ISS identical protein binding
GO:0042995 IEA cell projection
GO:0051260 ISS protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358385 ATL1-001 protein_coding Homo_sapiens 0 2756
ENST00000441560 ATL1-002 protein_coding Homo_sapiens 0 2638
ENST00000553509 ATL1-006 protein_coding Homo_sapiens 0 244
ENST00000554886 ATL1-008 protein_coding Homo_sapiens 0 542
ENST00000555266 ATL1-009 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000555720 SAV1-002 protein_coding Homo_sapiens 0 494
ENST00000555960 ATL1-005 protein_coding Homo_sapiens 0 479
ENST00000556067 ATL1-011 nonsense_mediated_decay Homo_sapiens 0 444
ENST00000556478 ATL1-003 processed_transcript Homo_sapiens 0 302
ENST00000557735 ATL1-012 protein_coding Homo_sapiens 0 425

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