C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005HD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000039125-ENSDARG00000060481 CGP 7955 13:37107461-37186266
GeneTranscriptPositionBiotype
ENSDARG00000006196 (sav1)
salvador homolog 1 (Drosophila) 		ENSDART00000012357 (sav1-001) 37188943-37200070 protein_coding
ENSDART00000121782 (sav1-201) 37186138-37199746 protein_coding
ENSDARG00000039125 (map4k5)
mitogen-activated protein kinase kinase kinase kinase 5 		ENSDART00000029824 (map4k5-001) 37107461-37163320 protein_coding
ENSDART00000131534 (map4k5-002) 37142337-37163245 protein_coding
ENSDART00000137614 (map4k5-003) 37159421-37163182 processed_transcript
ENSDARG00000060481 (atl1)
atlastin GTPase 1 		ENSDART00000085230 (atl1-201) 37166705-37186264 protein_coding
ENSDART00000111832 (atl1-001) 37166581-37186266 protein_coding
ENSDART00000146696 (atl1-002) 37172604-37176139 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005HD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000012983-ENSG00000198513 CGP 9606 14:50418501-50633068
GeneTranscriptPositionBiotype
ENSG00000012983 (MAP4K5)
mitogen-activated protein kinase kinase kinase kinase 5 		ENST00000013125 (MAP4K5-001) 50418525-50532609 protein_coding
ENST00000554066 (MAP4K5-003) 50485929-50505128 retained_intron
ENST00000554091 (MAP4K5-011) 50464078-50532087 nonsense_mediated_decay
ENST00000554273 (MAP4K5-004) 50504799-50532655 protein_coding
ENST00000554990 (MAP4K5-002) 50418501-50450600 retained_intron
ENST00000555216 (MAP4K5-008) 50475092-50561126 protein_coding
ENST00000557124 (MAP4K5-007) 50434964-50438401 retained_intron
ENST00000557210 (MAP4K5-005) 50462693-50483149 retained_intron
ENST00000557390 (MAP4K5-006) 50476274-50532472 protein_coding
ENST00000557578 (MAP4K5-010) 50468690-50486145 processed_transcript
ENSG00000151748 (SAV1)
salvador family WW domain containing protein 1 		ENST00000324679 (SAV1-001) 50633636-50668331 protein_coding
ENST00000553731 (SAV1-007) 50634828-50665365 protein_coding
ENST00000555720 (SAV1-002) 50632058-50665509 protein_coding
ENST00000556735 (SAV1-006) 50665601-50668297 protein_coding
ENST00000557458 (SAV1-008) 50635113-50644809 protein_coding
ENST00000602664 (SAV1-010) 50664256-50665125 retained_intron
ENSG00000198513 (ATL1)
atlastin GTPase 1 		ENST00000358385 (ATL1-001) 50560025-50633068 protein_coding
ENST00000441560 (ATL1-002) 50533026-50633049 protein_coding
ENST00000553509 (ATL1-006) 50559552-50587885 protein_coding
ENST00000553746 (ATL1-007) 50590989-50591817 retained_intron
ENST00000554886 (ATL1-008) 50560131-50613286 protein_coding
ENST00000555266 (ATL1-009) 50614379-50628151 nonsense_mediated_decay
ENST00000555960 (ATL1-005) 50559087-50590957 protein_coding
ENST00000556067 (ATL1-011) 50628166-50632320 nonsense_mediated_decay
ENST00000556478 (ATL1-003) 50532509-50587936 processed_transcript
ENST00000557735 (ATL1-012) 50560287-50591048 protein_coding
ENSG00000201573 (Y_RNA)
Y RNA 		ENST00000364703 (Y_RNA.1-475) 50468397-50468498 misc_RNA
ENSG00000258577 (SNRPGP1)
small nuclear ribonucleoprotein polypeptide G pseudogene 1 		ENST00000553864 (SNRPGP1-001) 50571919-50572140 processed_pseudogene
ENSG00000273675 (RP11-406H23.5)
 ENST00000614375 (RP11-406H23.5-001) 50471769-50472592 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0005HD_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034761-ENSMUSG00000021066 CGP 10090 12:69803750-69964085
GeneTranscriptPositionBiotype
ENSMUSG00000021066 (Atl1)
atlastin GTPase 1 		ENSMUST00000021466 (Atl1-201) 69893105-69964085 protein_coding
ENSMUSG00000034761 (Map4k5)
mitogen-activated protein kinase kinase kinase kinase 5 		ENSMUST00000049239 (Map4k5-201) 69803759-69893163 protein_coding
ENSMUST00000110567 (Map4k5-003) 69803750-69893009 protein_coding
ENSMUST00000110570 (Map4k5-001) 69803750-69893200 protein_coding
ENSMUST00000124715 (Map4k5-005) 69844874-69874334 retained_intron
ENSMUST00000126584 (Map4k5-006) 69803761-69818453 retained_intron
ENSMUST00000133688 (Map4k5-004) 69848567-69893123 retained_intron
ENSMUST00000147451 (Map4k5-007) 69849037-69856424 retained_intron
ENSMUST00000153550 (Map4k5-008) 69817782-69818857 processed_transcript
ENSMUST00000153712 (Map4k5-002) 69803750-69893103 processed_transcript
ENSMUST00000171211 (Map4k5-202) 69803759-69893103 protein_coding
ENSMUSG00000065327 (Gm22058)
predicted gene, 22058 		ENSMUST00000083393 (Gm22058-201) 69930904-69931213 misc_RNA
ENSMUSG00000078370 (Gm6316)
predicted pseudogene 6316 		ENSMUST00000082064 (Gm6316-001) 69920472-69921491 processed_pseudogene
ENSMUSG00000097329 (4931403G20Rik)
RIKEN cDNA 4931403G20 gene 		ENSMUST00000180861 (4931403G20Rik-201) 69847635-69853671 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005HD_0001ENSDARG00000006196ENSDART00000012357ENSDART00000121782ENSDARG00000039125ENSDART00000029824ENSDART00000131534ENSDART00000137614ENSDARG00000060481ENSDART00000085230ENSDART00000111832ENSDART00000146696CIL_0005HD_0002ENSG00000012983ENST00000013125ENST00000554066ENST00000554091ENST00000554273ENST00000554990ENST00000555216ENST00000557124ENST00000557210ENST00000557390ENST00000557578ENSG00000151748ENST00000324679ENST00000553731ENST00000555720ENST00000556735ENST00000557458ENST00000602664ENSG00000198513ENST00000358385ENST00000441560ENST00000553509ENST00000553746ENST00000554886ENST00000555266ENST00000555960ENST00000556067ENST00000556478ENST00000557735ENSG00000201573ENST00000364703ENSG00000258577ENST00000553864ENSG00000273675ENST00000614375CIL_0005HD_0003ENSMUSG00000021066ENSMUST00000021466ENSMUSG00000034761ENSMUST00000049239ENSMUST00000110567ENSMUST00000110570ENSMUST00000124715ENSMUST00000126584ENSMUST00000133688ENSMUST00000147451ENSMUST00000153550ENSMUST00000153712ENSMUST00000171211ENSMUSG00000065327ENSMUST00000083393ENSMUSG00000078370ENSMUST00000082064ENSMUSG00000097329ENSMUST00000180861
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005HD_0001ENSDARG00000006196ENSDART00000012357ENSDARG00000039125ENSDART00000029824ENSDARG00000060481ENSDART00000085230ENSDART00000111832CIL_0005HD_0002ENSG00000012983ENST00000013125ENST00000554990ENSG00000151748ENST00000324679ENST00000555720ENST00000602664ENSG00000198513ENST00000358385ENSG00000201573ENST00000364703ENSG00000258577ENST00000553864ENSG00000273675ENST00000614375CIL_0005HD_0003ENSMUSG00000021066ENSMUST00000021466ENSMUSG00000034761ENSMUST00000049239ENSMUST00000110567ENSMUST00000110570ENSMUST00000126584ENSMUST00000133688ENSMUST00000153712ENSMUSG00000065327ENSMUST00000083393ENSMUSG00000078370ENSMUST00000082064ENSMUSG00000097329ENSMUST00000180861
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000006196 ENSDART00000012357 N/A N/A N/A 0.770±0.01 N/A N/A 24.073±6.00 12.581±3.61 1.833±0.00 N/A 9.237±0.00 N/A N/A N/A
ENSDART00000121782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000039125 ENSDART00000029824 N/A N/A N/A 2.156±1.21 N/A N/A 2.939±2.39 8.406±2.81 N/A N/A N/A N/A N/A N/A
ENSDART00000131534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000060481 ENSDART00000085230 N/A N/A N/A 33.685±5.35 N/A N/A N/A N/A N/A N/A 1.682±0.00 N/A N/A N/A
ENSDART00000111832 N/A N/A N/A 15.008±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000012983 ENST00000013125 3.330±0.00 2.644±0.00 1.466±0.00 8.405±0.96 5.325±0.45 5.173±0.61 2.582±0.00 6.676±0.00 N/A 5.995±2.37 N/A 7.471±2.16 4.124±1.15 6.549±0.00
ENST00000554066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554990 N/A N/A 0.829±0.00 N/A 1.898±0.00 N/A 0.591±0.00 N/A 3.359±0.00 N/A N/A N/A N/A N/A
ENST00000555216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000151748 ENST00000324679 10.351±0.00 8.289±0.00 1.651±0.00 N/A 7.132±3.35 6.609±4.08 4.306±2.68 6.553±4.29 4.250±1.65 10.921±7.00 3.972±2.78 7.102±3.68 5.068±0.69 13.684±2.25
ENST00000553731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555720 N/A N/A N/A 10.160±0.00 2.467±0.00 2.912±0.00 1.123±0.00 N/A N/A N/A 1.268±0.00 N/A N/A 3.701±0.00
ENST00000556735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602664 2.334±0.00 0.845±0.00 0.264±0.00 0.561±0.23 1.009±0.46 1.137±0.31 0.349±0.11 0.629±0.57 0.226±0.11 3.364±1.71 0.149±0.00 1.100±0.55 0.813±0.11 1.842±0.00
ENSG00000198513 ENST00000358385 N/A N/A N/A 8.076±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201573 ENST00000364703 N/A N/A N/A 81.496±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258577 ENST00000553864 N/A 0.282±0.00 N/A 1.232±0.00 N/A N/A 2.943±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000273675 ENST00000614375 0.011±0.00 0.120±0.00 N/A 0.010±0.00 0.136±0.00 0.203±0.00 N/A N/A N/A 0.073±0.00 N/A 0.090±0.07 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021066 ENSMUST00000021466 1.340±0.01 2.949±0.00 3.461±0.10 21.943±1.81 1.353±0.22 2.631±0.00 1.165±0.13 N/A 0.553±0.13 1.764±0.02 N/A N/A N/A 12.042±5.89
ENSMUSG00000034761 ENSMUST00000049239 N/A N/A N/A 5.414±0.00 2.317±0.36 3.005±0.57 N/A N/A 1.064±0.34 N/A 2.028±0.37 5.255±1.90 6.840±0.30 2.018±0.00
ENSMUST00000110567 N/A N/A N/A N/A 1.485±0.00 N/A N/A N/A N/A N/A N/A 3.304±0.00 N/A N/A
ENSMUST00000110570 5.496±2.65 N/A 10.610±2.34 7.827±0.37 2.267±0.71 2.687±0.00 3.067±0.41 4.689±0.09 6.382±5.89 4.823±0.71 5.712±1.31 4.983±0.40 8.400±3.08 4.660±0.47
ENSMUST00000124715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126584 2.037±1.43 N/A 2.598±0.14 N/A 1.131±0.10 N/A N/A N/A 2.010±0.85 1.686±0.09 N/A N/A N/A N/A
ENSMUST00000133688 N/A 9.336±2.62 N/A N/A 9.624±2.92 8.770±2.32 N/A N/A N/A 2.920±0.00 N/A 15.787±4.61 N/A N/A
ENSMUST00000147451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153712 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.662±0.00 N/A 7.479±0.00 N/A N/A
ENSMUST00000171211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065327 ENSMUST00000083393 N/A 0.238±0.03 0.088±0.02 0.439±0.19 0.268±0.00 N/A N/A 0.297±0.08 0.070±0.00 0.222±0.00 N/A 1.245±0.60 0.037±0.00 0.197±0.00
ENSMUSG00000078370 ENSMUST00000082064 0.185±0.09 0.107±0.07 0.911±0.80 0.431±0.42 0.110±0.04 0.079±0.04 0.120±0.07 0.139±0.13 0.366±0.63 0.075±0.05 1.589±0.77 0.203±0.10 0.122±0.05 0.270±0.04
ENSMUSG00000097329 ENSMUST00000180861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.289±3.57

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