C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vasohibin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021681 Vash1-001 ENSMUSG00000021256 10090 + 12:86678700-86692091 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021681
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021681 2.195±0.97 1.803±0.49 14.641±1.32 1.826±1.68 1.141±0.27 1.517±0.27 0.439±0.27 0.282±0.06 3.017±0.21 0.897±0.00 4.643±1.95 0.413±0.07 0.860±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003P4 CIL_0003P4_0002 CGP 12:86361117-86692091
CIL_0007VF CIL_0007VF_0002 VISTA 12:86500572-87103602
CIL_0008WP CIL_0008WP_0002 VISTA 12:86510598-87113301
CIL_000867 CIL_000867_0002 VISTA 12:86515545-87117582
CIL_0007VT CIL_0007VT_0002 VISTA 12:86594665-87199694
CIL_0003P3 CIL_0003P3_0002 CGP 12:86678700-86726460

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 ISO angiogenesis
GO:0001937 ISO negative regulation of endothelial cell proliferation
GO:0003674 ND molecular_function
GO:0005615 IEA extracellular space
GO:0005737 ISO cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0007050 IEA cell cycle arrest
GO:0009611 ISO response to wounding
GO:0010596 IEA negative regulation of endothelial cell migration
GO:0010628 ISO positive regulation of gene expression
GO:0016525 IDA negative regulation of angiogenesis
GO:0043537 IEA negative regulation of blood vessel endothelial cell migration
GO:0045177 IEA apical part of cell
GO:1901491 ISO negative regulation of lymphangiogenesis
GO:2000772 ISO regulation of cellular senescence

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000167106 VASH1-001 protein_coding Homo_sapiens 0 1367
ENST00000553518 VASH1-005 processed_transcript Homo_sapiens 0 342
ENST00000554237 VASH1-002 protein_coding Homo_sapiens 0 608
ENST00000556038 VASH1-006 processed_transcript Homo_sapiens 0 902

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