C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vasohibin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554237 VASH1-002 ENSG00000071246 9606 + 14:76762329-76773650 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLiverMuscleENST00000554237
Transcript ID Bladder Brain Breast Colon Liver Muscle
ENST00000554237 0.459±0.00 1.727±0.00 3.285±0.00 0.429±0.00 2.185±0.00 0.203±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003P4 CIL_0003P4_0001 CGP 14:76310614-76783015
CIL_0007VF CIL_0007VF_0001 VISTA 14:76618298-77221354
CIL_0008WP CIL_0008WP_0001 VISTA 14:76629854-77233554
CIL_000867 CIL_000867_0001 VISTA 14:76636452-77239164
CIL_0007VT CIL_0007VT_0001 VISTA 14:76740528-77345010
CIL_0003P3 CIL_0003P3_0001 CGP 14:76762189-76826246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IDA angiogenesis
GO:0001937 IDA negative regulation of endothelial cell proliferation
GO:0005615 IDA extracellular space
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0007050 IEA cell cycle arrest
GO:0009611 IDA response to wounding
GO:0010596 IGI negative regulation of endothelial cell migration
GO:0016525 IDA negative regulation of angiogenesis
GO:0043537 IDA negative regulation of blood vessel endothelial cell migration
GO:0045177 IDA apical part of cell
GO:1901491 IGI negative regulation of lymphangiogenesis
GO:2000772 IMP regulation of cellular senescence

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021681 Vash1-001 protein_coding Mus_musculus 0 608

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