C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 208, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022450 Fam208a-201 ENSMUSG00000040651 10090 + 14:27428847-27483552 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022450
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022450 2.287±1.29 4.256±1.72 8.755±0.90 6.045±3.41 3.492±1.81 2.315±0.43 0.698±0.23 1.149±0.54 2.239±1.08 5.014±0.23 0.342±0.08 4.363±1.38 3.921±0.72 1.775±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UE CIL_0007UE_0002 VISTA 14:27067008-27667960
CIL_00002Z CIL_00002Z_0002 CGP 14:27238039-27483552
CIL_00002W CIL_00002W_0002 CGP 14:27428847-27508460

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355628 FAM208A-003 protein_coding Homo_sapiens 0 2787
ENST00000431842 FAM208A-002 protein_coding Homo_sapiens 0 1655
ENST00000459993 FAM208A-001 retained_intron Homo_sapiens 0 1773
ENST00000461863 FAM208A-008 retained_intron Homo_sapiens 0 320
ENST00000477406 FAM208A-009 retained_intron Homo_sapiens 0 267
ENST00000478052 FAM208A-005 processed_transcript Homo_sapiens 0 320
ENST00000485156 FAM208A-006 processed_transcript Homo_sapiens 0 1153
ENST00000487036 FAM208A-007 retained_intron Homo_sapiens 0 791
ENST00000493960 FAM208A-004 protein_coding Homo_sapiens 0 2983
ENST00000614531 FAM208A-201 protein_coding Homo_sapiens 0 1655

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