C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scavenger receptor class A, member 5 (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022610 Scara5-001 ENSMUSG00000022032 10090 + 14:65666403-65764826 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022610
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022610 27.553±6.18 14.005±0.85 56.277±2.70 0.564±0.35 29.684±1.72 4.703±1.45 7.124±0.73 1.941±0.47 0.175±0.11 8.196±0.51 2.983±0.54 8.708±2.52 2.641±1.26 14.813±2.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DK CIL_0009DK_0002 VISTA 14:65449305-66050499

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005044 IEA scavenger receptor activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006879 IDA cellular iron ion homeostasis
GO:0006897 IDA endocytosis
GO:0006898 IEA receptor-mediated endocytosis
GO:0009986 IDA cell surface
GO:0010468 IEA regulation of gene expression
GO:0030193 IEA regulation of blood coagulation
GO:0030666 TAS endocytic vesicle membrane
GO:0034605 IDA cellular response to heat
GO:0034755 IDA iron ion transmembrane transport
GO:0070207 IPI protein homotrimerization
GO:0070287 IDA ferritin receptor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354914 SCARA5-001 protein_coding Homo_sapiens 0 1605
ENST00000380385 SCARA5-003 protein_coding Homo_sapiens 0 512
ENST00000518030 SCARA5-005 protein_coding Homo_sapiens 0 979
ENST00000524352 SCARA5-004 protein_coding Homo_sapiens 0 1338

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