C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scavenger receptor class A, member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354914 SCARA5-001 ENSG00000168079 9606 - 8:27869882-27992727 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354914
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354914 15.117±0.00 3.947±0.00 0.324±0.07 14.321±9.99 26.297±21.70 4.559±2.56 0.802±0.13 8.757±8.64 9.696±7.60 5.733±0.00 2.743±2.19 9.172±4.47 11.132±8.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DK CIL_0009DK_0001 VISTA 8:27594923-28195834

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005044 IEA scavenger receptor activity
GO:0005515 IEA protein binding
GO:0005887 ISS integral component of plasma membrane
GO:0006879 ISS cellular iron ion homeostasis
GO:0006897 ISS endocytosis
GO:0006898 IEA receptor-mediated endocytosis
GO:0009986 IEA cell surface
GO:0010468 IMP regulation of gene expression
GO:0016020 IEA membrane
GO:0030193 IMP regulation of blood coagulation
GO:0034605 IEA cellular response to heat
GO:0034755 ISS iron ion transmembrane transport
GO:0070207 ISS protein homotrimerization
GO:0070287 ISS ferritin receptor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022610 Scara5-001 protein_coding Mus_musculus 0 1605
ENSMUST00000069226 Scara5-003 protein_coding Mus_musculus 0 1336
ENSMUST00000154373 Scara5-002 processed_transcript Mus_musculus 0 1133

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