C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scavenger receptor class A, member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380385 SCARA5-003 ENSG00000168079 9606 - 8:27870236-27992664 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380385
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380385 7.369±0.00 2.083±0.00 0.127±0.00 2.894±1.35 15.767±11.21 1.554±0.49 0.726±0.16 4.442±4.39 2.072±0.00 3.155±0.00 1.286±0.00 10.253±4.98 7.688±5.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DK CIL_0009DK_0001 VISTA 8:27594923-28195834

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005044 IEA scavenger receptor activity
GO:0005887 ISS integral component of plasma membrane
GO:0006879 ISS cellular iron ion homeostasis
GO:0006897 ISS endocytosis
GO:0006898 IEA receptor-mediated endocytosis
GO:0010468 IMP regulation of gene expression
GO:0016020 IEA membrane
GO:0030193 IMP regulation of blood coagulation
GO:0034755 ISS iron ion transmembrane transport
GO:0070207 ISS protein homotrimerization
GO:0070287 ISS ferritin receptor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022610 Scara5-001 protein_coding Mus_musculus 0 512
ENSMUST00000069226 Scara5-003 protein_coding Mus_musculus 0 361
ENSMUST00000154373 Scara5-002 processed_transcript Mus_musculus 0 243

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