C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ceroid-lipofuscinosis, neuronal 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022721 Cln5-201 ENSMUSG00000022125 10090 + 14:103070216-103077579 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022721
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022721 22.817±8.80 48.215±4.77 10.720±1.13 2.644±0.94 22.490±6.66 26.270±8.60 7.937±0.37 16.623±3.01 11.428±3.22 19.883±3.31 5.266±1.30 19.794±9.58 16.659±6.96 1.414±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004A CIL_00004A_0002 CGP 14:103046977-103077579
CIL_0004PQ CIL_0004PQ_0003 CGP 14:103070216-103099566

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005537 ISS mannose binding
GO:0005764 ISS lysosome
GO:0005765 ISS lysosomal membrane
GO:0005775 IDA vacuolar lumen
GO:0005783 ISS endoplasmic reticulum
GO:0005794 ISS Golgi apparatus
GO:0006465 ISS signal peptide processing
GO:0007040 IMP lysosome organization
GO:0007042 ISS lysosomal lumen acidification
GO:0007420 ISS brain development
GO:0007601 IMP visual perception
GO:0008219 IEA cell death
GO:0016021 ISS integral component of membrane
GO:0022008 ISS neurogenesis
GO:0048471 ISS perinuclear region of cytoplasm
GO:0070062 IEA extracellular vesicular exosome
GO:0070085 ISS glycosylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377453 CLN5-001 protein_coding Homo_sapiens 0 852
ENST00000485938 CLN5-002 protein_coding Homo_sapiens 0 379
ENST00000616833 CLN5-003 protein_coding Homo_sapiens 0 852

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