C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ceroid-lipofuscinosis, neuronal 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377453 CLN5-001 ENSG00000102805 9606 + 13:76990660-77002517 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyOvaryPlacentaENST00000377453
Transcript ID Colon Kidney Ovary Placenta
ENST00000377453 2.410±0.00 4.617±0.00 2.914±0.00 2.655±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004A CIL_00004A_0001 CGP 13:76948497-77002517
CIL_0004PQ CIL_0004PQ_0002 CGP 13:76990660-77027195

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005537 IDA mannose binding
GO:0005764 IDA lysosome
GO:0005765 IDA lysosomal membrane
GO:0005775 IEA vacuolar lumen
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0006465 IDA signal peptide processing
GO:0007040 IEA lysosome organization
GO:0007042 IMP lysosomal lumen acidification
GO:0007420 IEP brain development
GO:0007601 IEA visual perception
GO:0008219 IEA cell death
GO:0016021 IDA integral component of membrane
GO:0022008 IEP neurogenesis
GO:0030163 NAS protein catabolic process
GO:0042551 NAS neuron maturation
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070062 IDA extracellular vesicular exosome
GO:0070085 IDA glycosylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022721 Cln5-201 protein_coding Mus_musculus 0 852

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