C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting and assembly machinery component 50 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023071 Samm50-201 ENSMUSG00000022437 10090 + 15:84192233-84214303 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023071
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023071 12.712±2.14 18.357±3.75 11.359±0.78 19.133±14.18 9.583±2.44 18.539±2.63 23.853±4.97 25.545±3.00 15.598±3.23 10.813±1.13 72.491±12.74 16.726±18.81 49.539±23.63 6.635±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HG CIL_0008HG_0002 VISTA 15:83917537-84520713
CIL_0004UY CIL_0004UY_0002 CGP 15:84167816-84214303
CIL_0006F0 CIL_0006F0_0002 CGP 15:84192233-84315688

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001401 IEA mitochondrial sorting and assembly machinery complex
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0005741 IEA mitochondrial outer membrane
GO:0005743 IDA mitochondrial inner membrane
GO:0016021 IEA integral component of membrane
GO:0045040 IEA protein import into mitochondrial outer membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000104420 samm50-001 protein_coding Danio_rerio 0 745
ENST00000350028 SAMM50-001 protein_coding Homo_sapiens 0 1469
ENST00000493161 SAMM50-004 processed_transcript Homo_sapiens 0 592

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