C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C1q and tumor necrosis factor related protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023075 C1qtnf6-001 ENSMUSG00000022440 10090 - 15:78523346-78529625 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023075
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023075 18.190±4.33 26.121±4.60 13.316±2.45 4.415±0.73 19.802±3.97 26.165±3.19 6.725±1.38 4.234±0.23 2.455±1.88 7.287±1.18 1.435±0.18 65.601±26.35 35.292±21.91 3.664±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00036M CIL_00036M_0002 CGP 15:78480553-78529625
CIL_00036N CIL_00036N_0002 CGP 15:78523346-78544345

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005581 IEA collagen trimer
GO:0005615 IDA extracellular space
GO:0042802 IDA identical protein binding
GO:0051259 IDA protein oligomerization
GO:0070208 IPI protein heterotrimerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337843 C1QTNF6-004 protein_coding Homo_sapiens 0 449
ENST00000397110 C1QTNF6-001 protein_coding Homo_sapiens 0 449
ENST00000434784 C1QTNF6-003 protein_coding Homo_sapiens 0 401
ENST00000470655 C1QTNF6-002 processed_transcript Homo_sapiens 0 363
ENST00000493023 C1QTNF6-005 retained_intron Homo_sapiens 0 431

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