C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 5A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023117 Phf5a-001 ENSMUSG00000061360 10090 - 15:81865319-81871911 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023117
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023117 37.580±6.17 30.692±4.22 39.982±8.19 49.953±23.59 25.397±3.71 34.262±5.78 24.644±0.77 34.061±4.29 77.395±60.65 26.090±3.26 25.823±2.09 29.738±10.53 67.242±21.14 20.704±5.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065P CIL_00065P_0002 CGP 15:81865319-81915133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 ISS mRNA splicing, via spliceosome
GO:0003677 IEA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005686 ISS U2 snRNP
GO:0005689 IEA U12-type spliceosomal complex
GO:0006351 IEA transcription, DNA-templated
GO:0016363 IDA nuclear matrix
GO:0016607 IDA nuclear speck
GO:0044822 IEA poly(A) RNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216252 PHF5A-001 protein_coding Homo_sapiens 0 568
ENST00000459687 PHF5A-002 retained_intron Homo_sapiens 0 414
ENST00000463176 RP13-1056D16.2-001 processed_pseudogene Homo_sapiens 0 346
ENST00000491254 PHF5A-003 processed_transcript Homo_sapiens 0 326
ENST00000559380 RP11-66B24.3-001 processed_pseudogene Homo_sapiens 3e-25 117
ENST00000591298 PHF5CP-001 processed_pseudogene Homo_sapiens 0 377

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