C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023154 Cldn1-001 ENSMUSG00000022512 10090 - 16:26356642-26371841 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023154
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023154 3.658±3.36 6.048±1.73 4.751±0.29 1.534±0.89 4.957±0.25 1.032±0.10 0.234±0.06 11.540±1.64 41.404±31.60 5.053±0.89 0.715±0.17 9.007±2.96 7.717±8.54 0.302±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DQ CIL_0000DQ_0002 CGP 16:25959288-26371841
CIL_0000DN CIL_0000DN_0002 CGP 16:26356642-26482765

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0005923 IDA tight junction
GO:0016021 NAS integral component of membrane
GO:0016324 IDA apical plasma membrane
GO:0016328 IDA lateral plasma membrane
GO:0016338 IDA calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0030054 TAS cell junction
GO:0042802 IPI identical protein binding
GO:0045216 IEA cell-cell junction organization
GO:0061436 IMP establishment of skin barrier

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295522 CLDN1-001 protein_coding Homo_sapiens 0 841

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