C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000DQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000090530-ENSG00000163347 CGP 9606 3:189956728-190322475
GeneTranscriptPositionBiotype
ENSG00000090530 (LEPREL1)
leprecan-like 1 		ENST00000319332 (LEPREL1-001) 189956728-190120929 protein_coding
ENST00000426003 (LEPREL1-003) 189988915-190121678 protein_coding
ENST00000427335 (LEPREL1-002) 189956831-190122437 protein_coding
ENST00000444866 (LEPREL1-004) 189988907-190116648 protein_coding
ENST00000463171 (LEPREL1-010) 189963459-189971927 retained_intron
ENST00000467131 (LEPREL1-008) 189964050-189973184 retained_intron
ENST00000470925 (LEPREL1-005) 189974568-189987765 retained_intron
ENST00000475095 (LEPREL1-006) 189974573-189983484 retained_intron
ENST00000482780 (LEPREL1-007) 189971548-189974190 retained_intron
ENST00000490940 (LEPREL1-009) 189957697-189964121 retained_intron
ENSG00000163347 (CLDN1)
claudin 1 		ENST00000295522 (CLDN1-001) 190305701-190322475 protein_coding
ENST00000490800 (CLDN1-004) 190310169-190313218 retained_intron
ENSG00000225764 (LEPREL1-AS1)
LEPREL1 antisense RNA 1 		ENST00000412203 (LEPREL1-AS1-001) 190120964-190144846 antisense
ENSG00000230077 (MTAPP2)
methylthioadenosine phosphorylase pseudogene 2 		ENST00000437063 (MTAPP2-001) 189969030-189969861 processed_pseudogene
ENSG00000238077 (NMNAT1P3)
NMNAT1 pseudogene 3 		ENST00000457517 (NMNAT1P3-001) 190166764-190167651 processed_pseudogene
ENSG00000252733 (AC067718.1)
 ENST00000516924 (AC067718.1-201) 190143656-190143743 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000DQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038168-ENSMUSG00000022512 CGP 10090 16:25959288-26371841
GeneTranscriptPositionBiotype
ENSMUSG00000022512 (Cldn1)
claudin 1 		ENSMUST00000023154 (Cldn1-001) 26356642-26371841 protein_coding
ENSMUSG00000038168 (Leprel1)
leprecan-like 1 		ENSMUST00000039990 (Leprel1-001) 25959288-26105784 protein_coding
ENSMUST00000159161 (Leprel1-002) 25997161-26014593 processed_transcript
ENSMUST00000160067 (Leprel1-004) 25972282-25985174 retained_intron
ENSMUST00000161878 (Leprel1-003) 25985504-25992791 processed_transcript
ENSMUSG00000090203 (AU015336)
expressed sequence AU015336 		ENSMUST00000159040 (AU015336-001) 26031810-26040870 sense_intronic
ENSMUSG00000090257 (Gm4524)
predicted gene 4524 		ENSMUST00000161614 (Gm4524-001) 25956475-25960342 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000DQ_0001ENSG00000090530ENST00000319332ENST00000426003ENST00000427335ENST00000444866ENST00000463171ENST00000467131ENST00000470925ENST00000475095ENST00000482780ENST00000490940ENSG00000163347ENST00000295522ENST00000490800ENSG00000225764ENST00000412203ENSG00000230077ENST00000437063ENSG00000238077ENST00000457517ENSG00000252733ENST00000516924CIL_0000DQ_0002ENSMUSG00000022512ENSMUST00000023154ENSMUSG00000038168ENSMUST00000039990ENSMUST00000159161ENSMUST00000160067ENSMUST00000161878ENSMUSG00000090203ENSMUST00000159040ENSMUSG00000090257ENSMUST00000161614
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000DQ_0001ENSG00000090530ENST00000319332ENST00000427335ENST00000444866ENST00000467131ENST00000470925ENST00000490940ENSG00000163347ENST00000295522ENSG00000225764ENST00000412203ENSG00000230077ENST00000437063ENSG00000238077ENST00000457517ENSG00000252733ENST00000516924CIL_0000DQ_0002ENSMUSG00000022512ENSMUST00000023154ENSMUSG00000038168ENSMUST00000039990ENSMUST00000159161ENSMUST00000160067ENSMUST00000161878ENSMUSG00000090203ENSMUST00000159040ENSMUSG00000090257ENSMUST00000161614
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000090530 ENST00000319332 1.355±0.00 1.794±0.00 4.307±0.00 0.571±0.00 2.531±0.00 1.634±1.17 0.572±0.00 19.800±18.91 0.352±0.15 5.791±1.56 0.151±0.00 7.238±4.43 5.166±1.09 2.498±1.10
ENST00000426003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427335 N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000444866 N/A N/A N/A 0.644±0.00 N/A N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A N/A
ENST00000463171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467131 N/A N/A N/A N/A N/A N/A N/A N/A 2.305±0.00 N/A N/A N/A N/A N/A
ENST00000470925 N/A N/A N/A N/A N/A 1.426±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490940 N/A N/A N/A N/A N/A N/A N/A N/A 1.022±0.00 N/A 0.124±0.00 N/A N/A 4.853±0.00
ENSG00000163347 ENST00000295522 0.815±0.00 0.466±0.00 N/A 0.283±0.00 1.321±0.28 0.478±0.00 0.177±0.00 14.278±6.54 14.097±12.00 3.500±2.93 0.120±0.07 39.544±27.62 4.335±3.36 4.516±2.87
ENST00000490800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225764 ENST00000412203 0.743±0.00 1.508±0.00 N/A 1.893±0.00 0.692±0.00 0.472±0.40 0.801±0.25 1.395±0.00 0.225±0.00 0.862±0.58 0.201±0.00 0.690±0.19 0.530±0.31 1.676±0.48
ENSG00000230077 ENST00000437063 N/A 0.051±0.00 0.868±0.00 0.018±0.00 N/A 0.105±0.00 0.016±0.00 0.187±0.00 0.069±0.00 0.786±0.00 N/A 0.358±0.00 0.031±0.00 N/A
ENSG00000238077 ENST00000457517 N/A N/A N/A 0.074±0.00 N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A N/A N/A
ENSG00000252733 ENST00000516924 N/A N/A N/A 0.616±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022512 ENSMUST00000023154 3.658±3.36 6.048±1.73 4.751±0.29 1.534±0.89 4.957±0.25 1.032±0.10 0.234±0.06 11.540±1.64 41.404±31.60 5.053±0.89 0.715±0.17 9.007±2.96 7.717±8.54 0.302±0.25
ENSMUSG00000038168 ENSMUST00000039990 2.211±1.54 2.976±0.29 3.156±1.12 0.394±0.05 1.405±0.65 4.060±0.70 0.550±0.04 27.687±5.76 0.522±0.37 3.857±0.20 0.845±0.40 7.113±2.48 7.849±3.80 0.222±0.10
ENSMUST00000159161 N/A N/A N/A 4.728±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.989±0.00
ENSMUST00000160067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.903±0.00 N/A 0.394±0.13
ENSMUST00000161878 N/A N/A N/A N/A N/A N/A N/A N/A 0.645±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000090203 ENSMUST00000159040 N/A N/A 0.022±0.00 0.040±0.00 N/A N/A N/A 0.197±0.08 0.013±0.00 0.072±0.00 N/A 0.032±0.00 0.056±0.02 N/A
ENSMUSG00000090257 ENSMUST00000161614 N/A N/A N/A 0.121±0.00 N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A N/A N/A

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