C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295522 CLDN1-001 ENSG00000163347 9606 - 3:190305701-190322475 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295522
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295522 0.815±0.00 0.466±0.00 0.283±0.00 1.321±0.28 0.478±0.00 0.177±0.00 14.278±6.54 14.097±12.00 3.500±2.93 0.120±0.07 39.544±27.62 4.335±3.36 4.516±2.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DQ CIL_0000DQ_0001 CGP 3:189956728-190322475
CIL_0000DN CIL_0000DN_0001 CGP 3:190305701-190412143

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005887 IMP integral component of plasma membrane
GO:0005923 ISS tight junction
GO:0007155 TAS cell adhesion
GO:0016021 TAS:IEA integral component of membrane
GO:0016032 IEA viral process
GO:0016324 IEA apical plasma membrane
GO:0016328 IEA lateral plasma membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0042802 ISS identical protein binding
GO:0045216 IMP cell-cell junction organization
GO:0061436 IMP establishment of skin barrier

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023154 Cldn1-001 protein_coding Mus_musculus 0 841

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