C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: uridine monophosphate synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023510 Umps-001 ENSMUSG00000022814 10090 - 16:33954782-33967038 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023510
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023510 5.695±1.07 5.653±1.57 1.684±0.43 3.551±2.42 3.422±1.44 3.461±1.03 1.702±0.17 7.207±0.62 5.371±1.68 2.904±0.27 1.376±0.19 8.148±1.95 5.742±4.63 5.308±1.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HE CIL_0008HE_0002 VISTA 16:33792411-34395018

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004588 IEA orotate phosphoribosyltransferase activity
GO:0004590 IEA orotidine-5'-phosphate decarboxylase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006207 IEA 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006222 IEA UMP biosynthetic process
GO:0007565 IEA female pregnancy
GO:0007595 IEA lactation
GO:0035690 IEA cellular response to drug
GO:0044205 IEA 'de novo' UMP biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000232607 UMPS-001 protein_coding Homo_sapiens 0 1373
ENST00000460034 UMPS-006 nonsense_mediated_decay Homo_sapiens 0 1048
ENST00000462091 UMPS-002 nonsense_mediated_decay Homo_sapiens 0 1048
ENST00000467167 UMPS-008 nonsense_mediated_decay Homo_sapiens 0 1216
ENST00000474588 UMPS-004 nonsense_mediated_decay Homo_sapiens 0 761
ENST00000479719 UMPS-009 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000487622 UMPS-013 retained_intron Homo_sapiens 0 442
ENST00000495751 UMPS-012 processed_transcript Homo_sapiens 0 446

Loading