C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023610 Adamts1-001 ENSMUSG00000022893 10090 - 16:85793827-85803113 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023610
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023610 19.042±8.59 9.658±0.34 12.021±2.65 2.329±0.63 8.609±2.75 2.864±0.29 5.145±1.49 10.792±2.27 3.332±1.35 32.361±2.89 5.080±0.93 18.114±8.96 7.223±3.32 0.259±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000335 CIL_000335_0002 CGP 16:85421533-85803113
CIL_0008UA CIL_0008UA_0002 VISTA 16:85587133-86188622
CIL_00032M CIL_00032M_0002 CGP 16:85793827-85901125

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001542 IMP ovulation from ovarian follicle
GO:0001822 IMP kidney development
GO:0004222 IDA metalloendopeptidase activity
GO:0005515 IPI protein binding
GO:0005604 IDA basement membrane
GO:0005737 IEA cytoplasm
GO:0006508 IEA proteolysis
GO:0008201 IDA heparin binding
GO:0008270 IEA zinc ion binding
GO:0016525 ISO negative regulation of angiogenesis
GO:0031012 IDA extracellular matrix
GO:0031410 IDA cytoplasmic vesicle
GO:0060347 IMP heart trabecula formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000284984 ADAMTS1-001 protein_coding Homo_sapiens 0 2351
ENST00000451462 ADAMTS1-003 protein_coding Homo_sapiens 0 592
ENST00000464589 ADAMTS1-002 retained_intron Homo_sapiens 0 835
ENST00000492656 ADAMTS1-004 retained_intron Homo_sapiens 0 765
ENST00000517452 ADAMTS1-006 protein_coding Homo_sapiens 0 405
ENST00000517777 ADAMTS1-007 protein_coding Homo_sapiens 0 606

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