C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromatin assembly factor 1, subunit B (p60)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314103 CHAF1B-001 ENSG00000159259 9606 + 21:36385378-36419015 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainMuscleOvaryPlacentaTestisENST00000314103
Transcript ID Adipose Adrenal Brain Muscle Ovary Placenta Testis
ENST00000314103 1.062±0.00 2.036±0.00 2.448±0.00 3.618±0.00 3.724±2.03 1.470±0.58 3.640±1.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZC CIL_0006ZC_0001 CGP 21:36156782-36386148
CIL_0006Z5 CIL_0006Z5_0001 CGP 21:36320189-36419015
CIL_0006Z6 CIL_0006Z6_0001 CGP 21:36385378-36576569

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003682 TAS chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 NAS cytoplasm
GO:0005829 IDA cytosol
GO:0006260 IEA DNA replication
GO:0006281 IEA DNA repair
GO:0006335 IDA DNA replication-dependent nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006461 TAS protein complex assembly
GO:0007049 IEA cell cycle
GO:0031497 IDA chromatin assembly
GO:0033186 IDA CAF-1 complex
GO:0042393 NAS histone binding
GO:0043234 IDA protein complex
GO:0051082 TAS unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117099 Chaf1b-003 protein_coding Mus_musculus 0 1395
ENSMUST00000023666 Chaf1b-001 protein_coding Mus_musculus 0 1395
ENSMUST00000124313 Chaf1b-002 retained_intron Mus_musculus 0 771
ENSMUST00000152980 Chaf1b-008 processed_transcript Mus_musculus 0 412
ENSMUST00000143006 Chaf1b-006 retained_intron Mus_musculus 8e-20 104
ENSMUST00000145380 Ckmt1-003 retained_intron Mus_musculus 0.00002 57

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