C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: limb region 1 like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023736 Lmbr1l-001 ENSMUSG00000022999 10090 - 15:98903921-98918231 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023736
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023736 10.158±2.71 6.559±2.15 5.654±1.61 1.100±0.00 14.811±4.99 12.977±3.03 4.933±0.53 9.765±2.22 4.957±1.64 13.218±1.95 1.860±0.31 15.957±5.04 7.406±3.05 81.059±54.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000I CIL_00000I_0002 CGP 15:98893031-98918231
CIL_00000A CIL_00000A_0002 CGP 15:98903921-98934565

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005886 IEA plasma membrane
GO:0006897 IEA endocytosis
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267102 LMBR1L-001 protein_coding Homo_sapiens 0 2481
ENST00000417750 LMBR1L-002 nonsense_mediated_decay Homo_sapiens 0 2015
ENST00000457164 LMBR1L-009 nonsense_mediated_decay Homo_sapiens 0 656
ENST00000547382 LMBR1L-005 protein_coding Homo_sapiens 0 1565
ENST00000547670 LMBR1L-004 nonsense_mediated_decay Homo_sapiens 0 1232
ENST00000547675 LMBR1L-019 protein_coding Homo_sapiens 0 588
ENST00000547698 LMBR1L-027 protein_coding Homo_sapiens 0 433
ENST00000547813 LMBR1L-024 retained_intron Homo_sapiens 0 628
ENST00000548983 LMBR1L-013 processed_transcript Homo_sapiens 0 407
ENST00000549296 LMBR1L-010 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000549730 LMBR1L-016 retained_intron Homo_sapiens 0 606
ENST00000550137 LMBR1L-030 protein_coding Homo_sapiens 0 468
ENST00000550815 LMBR1L-014 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000550867 LMBR1L-006 retained_intron Homo_sapiens 0 1507
ENST00000551115 LMBR1L-003 retained_intron Homo_sapiens 0 337
ENST00000551143 LMBR1L-021 retained_intron Homo_sapiens 0 351
ENST00000551169 LMBR1L-015 nonsense_mediated_decay Homo_sapiens 0 616
ENST00000551272 LMBR1L-026 retained_intron Homo_sapiens 0 488
ENST00000551535 LMBR1L-011 retained_intron Homo_sapiens 0 468
ENST00000551782 LMBR1L-012 protein_coding Homo_sapiens 0 643
ENST00000551854 LMBR1L-008 protein_coding Homo_sapiens 0 468
ENST00000552141 LMBR1L-020 retained_intron Homo_sapiens 2e-23 113
ENST00000552153 LMBR1L-029 processed_transcript Homo_sapiens 0 337
ENST00000552449 LMBR1L-023 protein_coding Homo_sapiens 0 191
ENST00000552577 LMBR1L-007 retained_intron Homo_sapiens 0 859
ENST00000552879 LMBR1L-022 retained_intron Homo_sapiens 0 521
ENST00000553040 LMBR1L-028 nonsense_mediated_decay Homo_sapiens 0 558
ENST00000553204 LMBR1L-018 processed_transcript Homo_sapiens 0 599

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