C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein arginine N-methyltransferase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023873 Prmt5-001 ENSMUSG00000023110 10090 - 14:54507187-54517525 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023873
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023873 18.744±3.51 14.786±4.08 15.568±0.94 21.608±14.62 11.997±3.32 10.366±1.66 10.317±2.17 14.431±1.29 12.426±9.33 9.947±1.29 13.834±2.11 13.633±6.65 18.988±12.60 8.537±1.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WJ CIL_0006WJ_0002 CGP 14:54507187-54554361

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000387 ISS spliceosomal snRNP assembly
GO:0001046 IDA core promoter sequence-specific DNA binding
GO:0003682 IMP chromatin binding
GO:0003714 IMP transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0008168 ISO methyltransferase activity
GO:0008469 IBA histone-arginine N-methyltransferase activity
GO:0018216 ISS peptidyl-arginine methylation
GO:0019918 IBA peptidyl-arginine methylation, to symmetrical-dimethyl arginine
GO:0032922 IMP circadian regulation of gene expression
GO:0034709 ISS methylosome
GO:0034969 IBA histone arginine methylation
GO:0035243 ISS protein-arginine omega-N symmetric methyltransferase activity
GO:0035246 ISO peptidyl-arginine N-methylation
GO:0042118 IEA endothelial cell activation
GO:0043021 IEA ribonucleoprotein complex binding
GO:0043234 IEA protein complex
GO:0043985 IMP histone H4-R3 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216350 PRMT5-008 protein_coding Homo_sapiens 0 2122
ENST00000324366 PRMT5-003 protein_coding Homo_sapiens 0 2808
ENST00000397440 PRMT5-004 protein_coding Homo_sapiens 0 1531
ENST00000397441 PRMT5-007 protein_coding Homo_sapiens 0 2532
ENST00000421938 PRMT5-026 protein_coding Homo_sapiens 0 444
ENST00000454731 PRMT5-022 protein_coding Homo_sapiens 0 732
ENST00000476175 PRMT5-002 processed_transcript Homo_sapiens 0 584
ENST00000514351 PRMT5P1-001 processed_pseudogene Homo_sapiens 0 588
ENST00000553502 PRMT5-017 protein_coding Homo_sapiens 0 508
ENST00000553550 PRMT5-014 protein_coding Homo_sapiens 0 545
ENST00000553641 PRMT5-024 processed_transcript Homo_sapiens 0 994
ENST00000553787 PRMT5-025 nonsense_mediated_decay Homo_sapiens 0 647
ENST00000553897 PRMT5-010 protein_coding Homo_sapiens 0 2095
ENST00000553915 PRMT5-009 nonsense_mediated_decay Homo_sapiens 0 2303
ENST00000554716 PRMT5-023 processed_transcript Homo_sapiens 0 340
ENST00000554867 PRMT5-028 protein_coding Homo_sapiens 0 525
ENST00000554910 PRMT5-015 protein_coding Homo_sapiens 0 791
ENST00000555454 PRMT5-021 protein_coding Homo_sapiens 0 697
ENST00000555530 PRMT5-020 protein_coding Homo_sapiens 0 1064
ENST00000556032 PRMT5-029 retained_intron Homo_sapiens 0 327
ENST00000556043 PRMT5-018 protein_coding Homo_sapiens 0 641
ENST00000556426 PRMT5-012 processed_transcript Homo_sapiens 0 219
ENST00000556616 PRMT5-027 protein_coding Homo_sapiens 0 630
ENST00000557015 PRMT5-011 retained_intron Homo_sapiens 0 418
ENST00000557415 PRMT5-013 nonsense_mediated_decay Homo_sapiens 0 638
ENST00000557443 PRMT5-006 protein_coding Homo_sapiens 0 191
ENST00000557758 PRMT5-016 retained_intron Homo_sapiens 0 298

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