C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hemoglobin, beta adult s chain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023934 Hbb-bs-001 ENSMUSG00000052305 10090 - 7:103826534-103828078 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023934
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023934 186.722±20.40 76.978±3.54 45.875±6.95 498.567±352.88 111.737±38.81 92.110±57.71 5291.483±5944.81 732.683±191.71 126.906±11.16 2595.963±1144.46 32.461±13.47 80.603±53.54 870.182±1052.30 15.077±7.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PR CIL_0007PR_0002 VISTA 7:103558636-104159881
CIL_0003R8 CIL_0003R8_0007 CGP 7:103812524-103828096
CIL_0003R8 CIL_0003R8_0006 CGP 7:103826534-103840427

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005344 IEA oxygen transporter activity
GO:0005506 IEA iron ion binding
GO:0005833 IEA hemoglobin complex
GO:0015671 IEA oxygen transport
GO:0019825 IEA oxygen binding
GO:0020037 IEA heme binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292896 HBE1-201 protein_coding Homo_sapiens 0 303
ENST00000330597 HBG1-001 protein_coding Homo_sapiens 0 279
ENST00000335295 HBB-001 protein_coding Homo_sapiens 0 444
ENST00000336906 HBG2-201 protein_coding Homo_sapiens 0 291
ENST00000380237 HBE1-001 protein_coding Homo_sapiens 0 303
ENST00000380252 HBG2-004 protein_coding Homo_sapiens 0 263
ENST00000380259 HBG2-001 protein_coding Homo_sapiens 0 291
ENST00000380315 HBB-004 protein_coding Homo_sapiens 0 257
ENST00000444587 HBG2-003 processed_transcript Homo_sapiens 0 230
ENST00000475226 HBB-003 retained_intron Homo_sapiens 0 254
ENST00000485743 HBB-002 retained_intron Homo_sapiens 0 350
ENST00000620888 HBG2-202 protein_coding Homo_sapiens 0 285
ENST00000623781 AC104389.2-201 protein_coding Homo_sapiens 0 231
ENST00000624109 AC104389.1-201 protein_coding Homo_sapiens 0 237

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