C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hemoglobin, beta adult s chain
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052305 Hbb-bs 10090 - 7:103826534-103828096 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023934 Hbb-bs-001 103826534-103828078 protein_coding
  ENSMUST00000131960 Hbb-bs-003 103826535-103827737 retained_intron
  ENSMUST00000153218 Hbb-bs-002 103827452-103828096 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023934ENSMUST00000131960
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023934 186.722±20.40 76.978±3.54 45.875±6.95 498.567±352.88 111.737±38.81 92.110±57.71 5291.483±5944.81 732.683±191.71 126.906±11.16 2595.963±1144.46 32.461±13.47 80.603±53.54 870.182±1052.30 15.077±7.33
ENSMUST00000131960 67.236±8.47 248.497±46.29 N/A 240.321±0.00 178.009±2.41 124.164±95.43 N/A 431.932±352.44 80.866±34.65 4193.925±1246.97 16.697±5.94 43.724±21.34 3297.814±2775.49 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PR CIL_0007PR_0002 VISTA 7:103558636-104159881
CIL_0003R8 CIL_0003R8_0007 CGP 7:103812524-103828096
CIL_0003R8 CIL_0003R8_0006 CGP 7:103826534-103840427

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005344 IEA oxygen transporter activity
GO:0005506 IEA iron ion binding
GO:0005833 IEA hemoglobin complex
GO:0015671 IEA oxygen transport
GO:0019825 IEA oxygen binding
GO:0020037 IEA heme binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038147 hbbe3 hemoglobin beta embryonic-3 protein_coding Danio_rerio
ENSDARG00000045143 hbbe2 hemoglobin beta embryonic-2 protein_coding Danio_rerio
ENSDARG00000069734 zgc:92880 zgc:92880 protein_coding Danio_rerio
ENSDARG00000087390 si:ch211-5k11.12 si:ch211-5k11.12 protein_coding Danio_rerio
ENSDARG00000089087 ba1 ba1 globin protein_coding Danio_rerio
ENSDARG00000089963 hbbe1.1 hemoglobin beta embryonic-1.1 protein_coding Danio_rerio
ENSDARG00000090689 hbbe1.2 hemoglobin beta embryonic-1.2 protein_coding Danio_rerio
ENSDARG00000097238 ba1l ba1 globin, like protein_coding Danio_rerio
ENSG00000223609 HBD hemoglobin, delta protein_coding Homo_sapiens
ENSG00000244734 HBB hemoglobin, beta protein_coding Homo_sapiens

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