C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bystin-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024783 Bysl-201 ENSMUSG00000023988 10090 - 17:47599331-47611492 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024783
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024783 10.943±1.49 42.422±1.82 13.118±0.30 13.470±6.80 11.515±3.88 9.195±0.51 7.665±0.65 9.934±1.46 14.587±11.30 14.890±1.00 5.918±0.44 10.781±2.24 12.821±6.97 12.401±3.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000963 CIL_000963_0002 VISTA 17:47571879-48173076
CIL_0006L5 CIL_0006L5_0002 CGP 17:47599331-47624418

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000462 IMP maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0001701 IMP in utero embryonic development
GO:0001825 IMP blastocyst formation
GO:0001829 IMP trophectodermal cell differentiation
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0007155 ISS cell adhesion
GO:0008283 IMP cell proliferation
GO:0016020 IEA membrane
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding
GO:0045177 IDA apical part of cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230340 BYSL-001 protein_coding Homo_sapiens 0 1419
ENST00000372996 BYSL-006 nonsense_mediated_decay Homo_sapiens 0 1020
ENST00000489290 BYSL-004 nonsense_mediated_decay Homo_sapiens 0 846

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