C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: limb-bud and heart
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024857 Lbh-001 ENSMUSG00000024063 10090 + 17:72918305-72941942 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024857
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024857 32.658±13.20 18.805±1.28 20.477±4.95 34.512±21.03 51.140±14.84 33.284±9.17 229.342±26.60 31.930±0.71 6.757±1.55 119.734±13.99 2.914±1.08 64.592±30.39 2.681±1.60 1.476±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099K CIL_00099K_0002 VISTA 17:72722163-73324151
CIL_0000VH CIL_0000VH_0002 CGP 17:72836704-72941942
CIL_0000VG CIL_0000VG_0002 CGP 17:72918305-73243368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0010468 IEA regulation of gene expression
GO:0030193 IEA regulation of blood coagulation
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000395323 LBH-001 protein_coding Homo_sapiens 0 612
ENST00000401506 LBH-007 protein_coding Homo_sapiens 0 470
ENST00000404397 LBH-006 protein_coding Homo_sapiens 0 213
ENST00000406087 LBH-003 protein_coding Homo_sapiens 0 459
ENST00000407930 LBH-008 protein_coding Homo_sapiens 0 390
ENST00000412933 LBH-004 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000464412 LBH-005 processed_transcript Homo_sapiens 0 217
ENST00000467242 LBH-002 processed_transcript Homo_sapiens 0 520
ENST00000484150 LBH-009 processed_transcript Homo_sapiens 0 407

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