C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: limb bud and heart development
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395323 LBH-001 ENSG00000213626 9606 + 2:30231531-30260028 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395323
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395323 10.881±0.00 45.934±0.00 4.659±0.00 2.683±1.24 10.465±4.12 6.614±1.86 25.054±14.21 8.379±7.00 3.761±0.93 38.046±20.20 3.069±1.66 43.637±47.24 37.428±14.06 14.772±9.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099K CIL_00099K_0001 VISTA 2:30059340-30663789
CIL_0000VH CIL_0000VH_0001 CGP 2:30146941-30323730
CIL_0000VG CIL_0000VG_0001 CGP 2:30231531-30644225

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0010468 IMP regulation of gene expression
GO:0030193 IMP regulation of blood coagulation
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024857 Lbh-001 protein_coding Mus_musculus 0 612
ENSMUST00000148556 Lbh-002 nonsense_mediated_decay Mus_musculus 1e-25 122

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