C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 30 (zinc transporter), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024870 Slc30a6-201 ENSMUSG00000024069 10090 + 17:74395608-74424229 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024870
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024870 9.501±4.58 8.951±1.50 8.728±0.68 5.622±3.36 9.966±0.50 9.790±1.60 4.285±1.30 13.106±1.77 7.324±2.01 10.419±0.29 1.557±0.28 7.820±3.57 8.422±4.67 3.350±1.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VK CIL_0000VK_0002 CGP 17:74338987-74424229
CIL_0000MX CIL_0000MX_0002 CGP 17:74395608-74459108

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005385 IDA zinc ion transmembrane transporter activity
GO:0005739 IDA mitochondrion
GO:0005794 IEA Golgi apparatus
GO:0006829 IDA zinc ion transport
GO:0006895 IDA Golgi to endosome transport
GO:0016021 IEA integral component of membrane
GO:0071577 IDA zinc ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282587 SLC30A6-001 protein_coding Homo_sapiens 0 1700
ENST00000357055 SLC30A6-201 protein_coding Homo_sapiens 0 1550
ENST00000379343 SLC30A6-002 protein_coding Homo_sapiens 0 1434
ENST00000406369 SLC30A6-005 protein_coding Homo_sapiens 0 1430
ENST00000435660 SLC30A6-202 protein_coding Homo_sapiens 0 1053
ENST00000440718 SLC30A6-006 protein_coding Homo_sapiens 0 688
ENST00000449777 SLC30A6-004 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000454324 SLC30A6-003 nonsense_mediated_decay Homo_sapiens 0 420
ENST00000457724 SLC30A6-007 nonsense_mediated_decay Homo_sapiens 0 346

Loading