C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle-associated membrane protein, associated protein A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024897 Vapa-201 ENSMUSG00000024091 10090 - 17:65580056-65613555 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024897
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024897 39.410±10.02 266.100±44.18 62.341±6.85 57.215±17.90 72.158±51.47 140.811±11.79 19.468±2.65 40.228±13.96 35.377±7.23 102.594±31.07 50.142±1.91 170.073±66.08 83.749±23.01 23.805±10.70

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IEA signal transducer activity
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0005923 IEA tight junction
GO:0007165 IEA signal transduction
GO:0008219 ISS cell death
GO:0015630 IDA microtubule cytoskeleton
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0031175 ISS neuron projection development
GO:0031982 IEA vesicle
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046982 IEA protein heterodimerization activity
GO:0048471 IEA perinuclear region of cytoplasm
GO:0070972 ISS protein localization to endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340541 VAPA-002 protein_coding Homo_sapiens 0 773
ENST00000352732 ABHD2-001 protein_coding Homo_sapiens 0 865
ENST00000355100 ABHD2-201 protein_coding Homo_sapiens 0 865
ENST00000400000 VAPA-001 protein_coding Homo_sapiens 0 2263
ENST00000563131 RP11-326A19.5-001 processed_pseudogene Homo_sapiens 0 795
ENST00000577539 VAPA-007 retained_intron Homo_sapiens 0 243
ENST00000577901 VAPA-003 retained_intron Homo_sapiens 0 676
ENST00000583475 VAPA-004 retained_intron Homo_sapiens 0 953
ENST00000583879 VAPA-006 retained_intron Homo_sapiens 0 1038
ENST00000584796 VAPA-008 processed_transcript Homo_sapiens 0 894
ENST00000585042 VAPA-005 nonsense_mediated_decay Homo_sapiens 0 327

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