C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: endothelial PAS domain protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024954 Epas1-201 ENSMUSG00000024140 10090 + 17:86753907-86833410 protein_coding

Mus musculus EnsemblGRCm38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024954
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024954 42.034±5.58 52.650±9.50 13.938±6.35 10.348±8.50 32.570±8.41 28.603±2.92 34.116±12.57 36.097±6.08 12.023±7.94 294.371±14.04 19.884±1.61 29.441±6.19 51.600±40.30 5.186±2.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NQ CIL_0001NQ_0002 CGP 17:86753907-86922366

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001525 IMP angiogenesis
GO:0001666 ISO response to hypoxia
GO:0001892 IGI embryonic placenta development
GO:0001974 IMP blood vessel remodeling
GO:0002027 IMP regulation of heart rate
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006979 IMP response to oxidative stress
GO:0007005 IMP mitochondrion organization
GO:0007165 IEA signal transduction
GO:0007601 IMP visual perception
GO:0008134 IPI transcription factor binding
GO:0030097 IMP hemopoiesis
GO:0030154 IGI cell differentiation
GO:0030218 IMP erythrocyte differentiation
GO:0030324 IMP lung development
GO:0035035 ISS histone acetyltransferase binding
GO:0042415 IMP norepinephrine metabolic process
GO:0043129 IMP surfactant homeostasis
GO:0043565 IEA sequence-specific DNA binding
GO:0043619 IDA regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IPI protein heterodimerization activity
GO:0048469 IMP cell maturation
GO:0048625 IMP myoblast fate commitment
GO:0055072 IGI iron ion homeostasis
GO:0071456 ISS cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244302 HIF3A-001 retained_intron Homo_sapiens 5e-19 100
ENST00000244303 HIF3A-007 protein_coding Homo_sapiens 9e-17 94
ENST00000263734 EPAS1-001 protein_coding Homo_sapiens 0 2972
ENST00000291300 HIF3A-009 retained_intron Homo_sapiens 5e-19 100
ENST00000300862 HIF3A-006 protein_coding Homo_sapiens 6e-19 100
ENST00000377670 HIF3A-003 protein_coding Homo_sapiens 1e-18 100
ENST00000449347 EPAS1-007 protein_coding Homo_sapiens 0 1086
ENST00000463191 EPAS1-005 retained_intron Homo_sapiens 0 734
ENST00000466465 EPAS1-010 retained_intron Homo_sapiens 0 981
ENST00000472815 HIF3A-004 protein_coding Homo_sapiens 7e-17 94
ENST00000475432 HIF3A-002 retained_intron Homo_sapiens 5e-19 100
ENST00000475822 EPAS1-003 processed_transcript Homo_sapiens 0 418
ENST00000483692 EPAS1-008 retained_intron Homo_sapiens 0 658
ENST00000525854 HIF3A-013 processed_transcript Homo_sapiens 3e-17 94
ENST00000528563 HIF3A-018 nonsense_mediated_decay Homo_sapiens 3e-19 100
ENST00000531043 HIF3A-016 nonsense_mediated_decay Homo_sapiens 0.00000000000004 82
ENST00000600383 HIF3A-023 protein_coding Homo_sapiens 8e-17 94

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