C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mutS homolog 2 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024967 Msh2-001 ENSMUSG00000024151 10090 + 17:87672330-87723713 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024967
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024967 2.851±0.98 0.718±0.17 8.882±0.64 14.520±2.69 2.259±0.43 2.320±0.83 3.475±0.41 4.239±0.81 7.576±6.02 3.839±1.03 4.535±0.39 6.621±5.11 9.934±3.78 2.159±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D2 CIL_0008D2_0002 VISTA 17:87075116-87678515
CIL_0006KU CIL_0006KU_0002 CGP 17:87635979-87723713
CIL_0006KS CIL_0006KS_0002 CGP 17:87672330-87797994

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IBA nuclear chromosome
GO:0000287 IEA magnesium ion binding
GO:0000400 IBA four-way junction DNA binding
GO:0000403 IBA Y-form DNA binding
GO:0000404 IBA heteroduplex DNA loop binding
GO:0000406 IBA double-strand/single-strand DNA junction binding
GO:0000710 IBA meiotic mismatch repair
GO:0001701 IGI in utero embryonic development
GO:0002204 IGI somatic recombination of immunoglobulin genes involved in immune response
GO:0003677 ISS DNA binding
GO:0003684 IMP damaged DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006119 IMP oxidative phosphorylation
GO:0006200 IBA ATP catabolic process
GO:0006281 IMP DNA repair
GO:0006298 IMP mismatch repair
GO:0006301 ISS postreplication repair
GO:0006302 IMP double-strand break repair
GO:0006311 IBA meiotic gene conversion
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007050 IMP cell cycle arrest
GO:0007281 IMP germ cell development
GO:0008022 IEA protein C-terminus binding
GO:0008094 IBA DNA-dependent ATPase activity
GO:0008340 IMP determination of adult lifespan
GO:0008584 IMP male gonad development
GO:0008630 IMP intrinsic apoptotic signaling pathway in response to DNA damage
GO:0010165 IMP response to X-ray
GO:0010224 IMP response to UV-B
GO:0016020 IEA membrane
GO:0016446 IMP somatic hypermutation of immunoglobulin genes
GO:0016447 IMP somatic recombination of immunoglobulin gene segments
GO:0016887 IMP ATPase activity
GO:0019237 IDA centromeric DNA binding
GO:0019724 IMP B cell mediated immunity
GO:0019899 IEA enzyme binding
GO:0019901 IEA protein kinase binding
GO:0030183 IMP B cell differentiation
GO:0030983 IMP mismatched DNA binding
GO:0031573 IGI intra-S DNA damage checkpoint
GO:0032137 ISO guanine/thymine mispair binding
GO:0032138 IBA single base insertion or deletion binding
GO:0032139 IEA dinucleotide insertion or deletion binding
GO:0032142 IEA single guanine insertion binding
GO:0032143 IEA single thymine insertion binding
GO:0032181 IEA dinucleotide repeat insertion binding
GO:0032301 IDA MutSalpha complex
GO:0032302 IBA MutSbeta complex
GO:0032357 IEA oxidized purine DNA binding
GO:0032405 IEA MutLalpha complex binding
GO:0042771 IBA intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0042803 IEA protein homodimerization activity
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0043531 IEA ADP binding
GO:0043570 IBA maintenance of DNA repeat elements
GO:0045128 IBA negative regulation of reciprocal meiotic recombination
GO:0045190 IMP isotype switching
GO:0045910 IMP negative regulation of DNA recombination
GO:0051096 IEA positive regulation of helicase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233146 MSH2-001 protein_coding Homo_sapiens 0 3199
ENST00000406134 MSH2-002 protein_coding Homo_sapiens 0 3053
ENST00000543555 MSH2-201 protein_coding Homo_sapiens 0 2929
ENST00000610696 MSH2-202 protein_coding Homo_sapiens 0 3144
ENST00000613514 MSH2-203 protein_coding Homo_sapiens 0 3144
ENST00000617333 MSH2-204 protein_coding Homo_sapiens 0 3144
ENST00000617938 MSH2-205 protein_coding Homo_sapiens 0 3144
ENST00000621359 MSH2-206 protein_coding Homo_sapiens 0 3144

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