C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006KU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119888-ENSG00000095002 CGP 9606 2:47345158-47562311
GeneTranscriptPositionBiotype
ENSG00000095002 (MSH2)
mutS homolog 2 		ENST00000233146 (MSH2-001) 47402969-47483228 protein_coding
ENST00000406134 (MSH2-002) 47403130-47513234 protein_coding
ENST00000454849 (MSH2-003) 47403067-47410346 protein_coding
ENST00000461394 (MSH2-005) 47480797-47562311 processed_transcript
ENST00000467323 (MSH2-006) 47555859-47562311 processed_transcript
ENST00000543555 (MSH2-201) 47403067-47483227 protein_coding
ENST00000610696 (MSH2-202) 47403152-47483023 protein_coding
ENST00000613514 (MSH2-203) 47403152-47483023 protein_coding
ENST00000617333 (MSH2-204) 47403152-47483023 protein_coding
ENST00000617938 (MSH2-205) 47403152-47483023 protein_coding
ENST00000621359 (MSH2-206) 47403152-47483023 protein_coding
ENSG00000119888 (EPCAM)
epithelial cell adhesion molecule 		ENST00000263735 (EPCAM-001) 47369148-47387034 protein_coding
ENST00000405271 (EPCAM-002) 47345158-47386900 protein_coding
ENST00000419334 (EPCAM-006) 47369495-47373993 protein_coding
ENST00000456133 (EPCAM-003) 47345163-47387601 nonsense_mediated_decay
ENST00000474691 (EPCAM-004) 47369475-47375254 retained_intron
ENST00000490733 (EPCAM-005) 47373775-47385210 retained_intron
ENSG00000184261 (KCNK12)
potassium channel, subfamily K, member 12 		ENST00000327876 (KCNK12-001) 47516581-47570939 protein_coding
ENST00000493527 (KCNK12-002) 47543344-47570315 processed_transcript
ENSG00000207923 (MIR559)
microRNA 559 		ENST00000385188 (MIR559-201) 47377675-47377770 miRNA
ENSG00000222685 (RN7SKP119)
RNA, 7SK small nuclear pseudogene 119 		ENST00000410753 (RN7SKP119-201) 47359505-47359777 misc_RNA
ENSG00000235760 (HCG2040054)
uncharacterized LOC644093 		ENST00000435331 (HCG2040054-001) 47527537-47529164 antisense
ENST00000439182 (HCG2040054-002) 47527771-47535199 antisense
ENSG00000277396 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000622819 (Metazoa_SRP.1-425) 47383160-47383421 misc_RNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0006KU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045394-ENSMUSG00000024151 CGP 10090 17:87635979-87723713
GeneTranscriptPositionBiotype
ENSMUSG00000024151 (Msh2)
mutS homolog 2 (E. coli) 		ENSMUST00000024967 (Msh2-001) 87672330-87723713 protein_coding
ENSMUST00000172596 (Msh2-004) 87688942-87696703 retained_intron
ENSMUST00000172855 (Msh2-005) 87672609-87685566 protein_coding
ENSMUST00000173097 (Msh2-002) 87672561-87709408 retained_intron
ENSMUST00000174240 (Msh2-003) 87672540-87679692 retained_intron
ENSMUST00000174703 (Msh2-006) 87696541-87717678 nonsense_mediated_decay
ENSMUSG00000045394 (Epcam)
epithelial cell adhesion molecule 		ENSMUST00000053577 (Epcam-201) 87635979-87651106 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006KU_0001ENSG00000095002ENST00000233146ENST00000406134ENST00000454849ENST00000461394ENST00000467323ENST00000543555ENST00000610696ENST00000613514ENST00000617333ENST00000617938ENST00000621359ENSG00000119888ENST00000263735ENST00000405271ENST00000419334ENST00000456133ENST00000474691ENST00000490733ENSG00000184261ENST00000327876ENST00000493527ENSG00000207923ENST00000385188ENSG00000222685ENST00000410753ENSG00000235760ENST00000435331ENST00000439182ENSG00000277396ENST00000622819CIL_0006KU_0002ENSMUSG00000024151ENSMUST00000024967ENSMUST00000172596ENSMUST00000172855ENSMUST00000173097ENSMUST00000174240ENSMUST00000174703ENSMUSG00000045394ENSMUST00000053577
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006KU_0001ENSG00000095002ENST00000233146ENST00000406134ENST00000454849ENST00000543555ENST00000617938ENSG00000119888ENST00000263735ENST00000405271ENST00000456133ENST00000474691ENST00000490733ENSG00000184261ENST00000327876ENST00000493527ENSG00000207923ENST00000385188ENSG00000222685ENST00000410753ENSG00000235760ENST00000435331ENST00000439182ENSG00000277396ENST00000622819CIL_0006KU_0002ENSMUSG00000024151ENSMUST00000024967ENSMUST00000172855ENSMUST00000174240ENSMUSG00000045394ENSMUST00000053577
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000095002 ENST00000233146 3.103±0.00 0.991±0.00 N/A 3.190±0.83 2.635±0.00 0.611±0.27 0.854±0.15 5.640±0.00 0.420±0.00 0.698±0.08 0.259±0.00 5.858±4.39 3.563±0.43 8.419±1.66
ENST00000406134 N/A N/A N/A 0.697±0.02 N/A N/A N/A N/A N/A N/A N/A 1.061±0.00 N/A N/A
ENST00000454849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.380±0.00 N/A N/A N/A
ENST00000461394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543555 N/A 1.717±0.00 N/A N/A 0.560±0.00 N/A 1.160±0.00 0.446±0.00 0.489±0.13 0.285±0.00 0.504±0.00 2.776±2.29 4.462±0.00 1.703±0.62
ENST00000610696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617938 N/A 1.115±0.00 0.730±0.00 2.138±0.00 4.299±0.00 1.694±0.58 0.837±0.00 N/A 1.544±0.00 1.712±1.27 0.534±0.35 5.095±0.00 N/A 1.357±0.00
ENST00000621359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000119888 ENST00000263735 N/A 0.278±0.00 10.865±0.00 1.370±0.29 18.974±10.22 62.520±1.46 N/A 47.989±47.44 0.614±0.23 15.744±8.07 N/A 42.486±21.62 1.363±0.44 10.939±4.92
ENST00000405271 0.457±0.00 N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A 172.361±0.00 N/A 12.719±0.00
ENST00000419334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456133 0.176±0.00 N/A N/A 0.192±0.00 2.343±0.00 30.322±0.00 0.039±0.00 35.491±0.00 N/A 6.549±5.30 0.037±0.00 193.984±0.00 1.478±1.16 10.947±0.90
ENST00000474691 N/A N/A N/A N/A N/A N/A N/A 1.971±0.00 N/A N/A N/A N/A N/A N/A
ENST00000490733 N/A 0.111±0.00 6.105±0.00 N/A 30.736±0.00 34.207±0.00 0.118±0.00 N/A N/A N/A 0.047±0.00 107.148±91.57 1.530±0.71 12.319±0.00
ENSG00000184261 ENST00000327876 0.071±0.00 0.023±0.00 0.105±0.00 1.576±0.49 0.092±0.00 0.070±0.02 0.056±0.00 0.094±0.07 N/A 0.054±0.00 0.092±0.08 0.128±0.14 1.046±0.54 0.238±0.16
ENST00000493527 N/A N/A N/A N/A N/A N/A N/A N/A 0.342±0.00 N/A N/A 0.075±0.00 N/A 0.241±0.00
ENSG00000207923 ENST00000385188 N/A N/A N/A N/A N/A 0.795±0.00 N/A N/A N/A N/A N/A 2.069±0.00 N/A 0.988±0.00
ENSG00000222685 ENST00000410753 N/A N/A N/A N/A N/A 1.832±0.00 N/A N/A N/A N/A N/A 0.379±0.00 N/A N/A
ENSG00000235760 ENST00000435331 N/A N/A N/A 0.116±0.00 0.161±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.475±0.15
ENST00000439182 N/A N/A 0.772±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.221±0.00 N/A N/A
ENSG00000277396 ENST00000622819 0.159±0.00 0.510±0.00 N/A 0.479±0.00 2.295±1.58 1.448±1.13 0.159±0.00 0.624±0.00 0.635±0.40 N/A 0.363±0.00 1.795±0.15 0.938±0.00 1.557±1.17
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024151 ENSMUST00000024967 2.851±0.98 0.718±0.17 8.882±0.64 14.520±2.69 2.259±0.43 2.320±0.83 3.475±0.41 4.239±0.81 7.576±6.02 3.839±1.03 4.535±0.39 6.621±5.11 9.934±3.78 2.159±0.46
ENSMUST00000172596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172855 N/A 10.286±1.97 N/A N/A 6.340±0.00 N/A N/A N/A N/A 5.861±0.00 N/A 6.498±0.07 N/A N/A
ENSMUST00000173097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.068±0.00 N/A N/A
ENSMUST00000174703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000045394 ENSMUST00000053577 13.333±13.27 0.040±0.02 16.998±3.39 0.635±0.39 34.858±10.11 289.114±148.93 0.493±0.11 34.972±3.57 0.673±0.78 21.322±5.27 0.077±0.07 28.024±6.31 36.539±18.31 4.192±1.11

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