C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mutS homolog 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000617938 MSH2-205 ENSG00000095002 9606 + 2:47403152-47483023 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryTestisENST00000617938
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000617938 1.115±0.00 0.730±0.00 2.138±0.00 4.299±0.00 1.694±0.58 0.837±0.00 1.544±0.00 1.712±1.27 0.534±0.35 5.095±0.00 1.357±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KU CIL_0006KU_0001 CGP 2:47345158-47562311
CIL_0006KS CIL_0006KS_0001 CGP 2:47402969-47570939

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006298 IEA mismatch repair
GO:0030983 IEA mismatched DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024967 Msh2-001 protein_coding Mus_musculus 0 3144
ENSMUST00000173097 Msh2-002 retained_intron Mus_musculus 0 1953
ENSMUST00000174703 Msh2-006 nonsense_mediated_decay Mus_musculus 0 370
ENSMUST00000172855 Msh2-005 protein_coding Mus_musculus 0 337
ENSMUST00000172596 Msh2-004 retained_intron Mus_musculus 0 331

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