C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin IV
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025110 Syt4-201 ENSMUSG00000024261 10090 - 18:31437808-31447415 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025110
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025110 0.050±0.05 0.561±0.15 0.042±0.01 21.545±6.26 0.048±0.02 0.288±0.12 0.027±0.01 0.145±0.09 0.025±0.01 0.024±0.00 0.012±0.00 0.046±0.05 0.010±0.01 0.053±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WU CIL_0003WU_0002 CGP 18:30973489-31447415

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0001786 IEA phosphatidylserine binding
GO:0005215 IEA transporter activity
GO:0005509 IDA calcium ion binding
GO:0006887 IEA exocytosis
GO:0007269 IDA neurotransmitter secretion
GO:0008021 IEA synaptic vesicle
GO:0016021 TAS integral component of membrane
GO:0017158 TAS regulation of calcium ion-dependent exocytosis
GO:0030054 IEA cell junction
GO:0030276 IEA clathrin binding
GO:0031045 IEA dense core granule
GO:0031339 IEA negative regulation of vesicle fusion
GO:0043005 IDA neuron projection
GO:0045955 IEA negative regulation of calcium ion-dependent exocytosis
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048489 TAS synaptic vesicle transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255224 SYT4-001 protein_coding Homo_sapiens 0 1581
ENST00000590752 SYT4-004 protein_coding Homo_sapiens 0 1384
ENST00000591820 SYT4-005 processed_transcript Homo_sapiens 0 372

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