C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trafficking protein particle complex 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025177 Trappc8-201 ENSMUSG00000033382 10090 - 18:20817224-20896078 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025177
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025177 3.475±0.87 8.111±1.66 4.441±1.18 4.467±1.28 5.420±2.40 3.281±2.00 4.197±1.10 4.633±1.01 3.863±1.15 4.985±3.19 3.176±1.95 6.222±2.34 7.179±3.36 2.525±1.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FN CIL_0002FN_0003 CGP 18:20817224-20983848

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283351 TRAPPC8-001 protein_coding Homo_sapiens 0 5696
ENST00000577474 TRAPPC8-008 retained_intron Homo_sapiens 0 712
ENST00000578658 TRAPPC8-005 protein_coding Homo_sapiens 0 684
ENST00000578886 TRAPPC8-010 retained_intron Homo_sapiens 0 324
ENST00000580104 TRAPPC8-003 nonsense_mediated_decay Homo_sapiens 0 3579
ENST00000582513 TRAPPC8-002 protein_coding Homo_sapiens 0 2599
ENST00000582539 TRAPPC8-004 protein_coding Homo_sapiens 0 5046
ENST00000584876 TRAPPC8-007 processed_transcript Homo_sapiens 0 518

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