C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: damage specific DNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025649 Ddb1-201 ENSMUSG00000024740 10090 + 19:10605625-10629813 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025649
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025649 89.925±19.93 60.797±16.15 66.831±10.34 57.050±23.68 50.033±23.02 47.855±8.49 30.588±2.86 63.785±4.58 52.952±21.64 65.277±3.75 43.237±2.62 93.492±27.21 251.921±111.52 41.939±17.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WT CIL_0007WT_0002 VISTA 19:10121785-10724671

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003684 IEA damaged DNA binding
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0016055 IDA Wnt signaling pathway
GO:0031464 ISS Cul4A-RING E3 ubiquitin ligase complex
GO:0031465 ISS Cul4B-RING E3 ubiquitin ligase complex
GO:0035518 IEA histone H2A monoubiquitination
GO:0042787 IEA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0043066 IMP negative regulation of apoptotic process
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0070062 IEA extracellular vesicular exosome
GO:0070914 IEA UV-damage excision repair
GO:0080008 ISS Cul4-RING E3 ubiquitin ligase complex
GO:1901990 IEA regulation of mitotic cell cycle phase transition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301764 DDB1-001 protein_coding Homo_sapiens 0 4789
ENST00000414411 DDB1-022 retained_intron Homo_sapiens 0 597
ENST00000451943 DDB1-026 protein_coding Homo_sapiens 0 765
ENST00000535147 DDB1-021 protein_coding Homo_sapiens 0 1295
ENST00000535174 DDB1-013 protein_coding Homo_sapiens 0 1116
ENST00000535283 DDB1-007 protein_coding Homo_sapiens 0 651
ENST00000535967 DDB1-018 protein_coding Homo_sapiens 0 1157
ENST00000537120 DDB1-014 retained_intron Homo_sapiens 0 1179
ENST00000537877 DDB1-019 protein_coding Homo_sapiens 0 1218
ENST00000538129 DDB1-010 retained_intron Homo_sapiens 0 460
ENST00000538280 DDB1-027 processed_transcript Homo_sapiens 1e-20 102
ENST00000538470 DDB1-025 protein_coding Homo_sapiens 0 857
ENST00000539332 DDB1-024 protein_coding Homo_sapiens 0 1190
ENST00000539426 DDB1-009 protein_coding Homo_sapiens 0 793
ENST00000539712 DDB1-020 retained_intron Homo_sapiens 0 883
ENST00000539739 DDB1-017 protein_coding Homo_sapiens 0 1092
ENST00000540166 DDB1-002 nonsense_mediated_decay Homo_sapiens 0 4597
ENST00000540784 DDB1-016 retained_intron Homo_sapiens 0 1256
ENST00000541513 DDB1-015 protein_coding Homo_sapiens 0 544
ENST00000542337 DDB1-008 protein_coding Homo_sapiens 0 590
ENST00000543658 DDB1-012 protein_coding Homo_sapiens 0 374
ENST00000545894 DDB1-023 retained_intron Homo_sapiens 0 383
ENST00000545930 DDB1-005 processed_transcript Homo_sapiens 0 839

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