C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: damage-specific DNA binding protein 1, 127kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000301764 DDB1-001 ENSG00000167986 9606 - 11:61299451-61333366 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301764
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301764 41.947±0.00 20.284±0.00 15.593±0.00 43.533±16.99 23.505±7.77 19.094±0.58 18.697±7.87 26.316±12.52 20.413±0.28 21.939±6.00 41.424±22.60 43.812±41.81 78.495±11.77 36.182±10.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WT CIL_0007WT_0001 VISTA 11:61244303-61847279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0003676 IEA nucleic acid binding
GO:0003677 TAS DNA binding
GO:0003684 IDA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006281 TAS DNA repair
GO:0006289 TAS nucleotide-excision repair
GO:0016032 IEA viral process
GO:0016055 IEA Wnt signaling pathway
GO:0031464 IDA Cul4A-RING E3 ubiquitin ligase complex
GO:0031465 IDA Cul4B-RING E3 ubiquitin ligase complex
GO:0035518 IDA histone H2A monoubiquitination
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0043066 IEA negative regulation of apoptotic process
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0070062 IDA extracellular vesicular exosome
GO:0070914 IDA UV-damage excision repair
GO:0080008 IDA Cul4-RING E3 ubiquitin ligase complex
GO:1901990 IMP regulation of mitotic cell cycle phase transition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025649 Ddb1-201 protein_coding Mus_musculus 0 4789
ENSDART00000111161 ddb1-201 protein_coding Danio_rerio 0 749

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