C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 26, subfamily a, polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025946 Cyp26a1-201 ENSMUSG00000024987 10090 + 19:37697808-37701528 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025946
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025946 0.323±0.25 0.054±0.01 0.079±0.06 0.145±0.10 0.042±0.02 0.149±0.02 0.149±0.06 24.532±38.99 0.063±0.05 0.042±0.01 5.921±3.21 0.259±0.15 0.646±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VX CIL_0007VX_0002 VISTA 19:37192022-37797349
CIL_0000ZX CIL_0000ZX_0002 CGP 19:37685581-37701528
CIL_0000ZY CIL_0000ZY_0002 CGP 19:37697808-38043577

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001972 IEA retinoic acid binding
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0007417 IGI central nervous system development
GO:0008401 IEA retinoic acid 4-hydroxylase activity
GO:0009952 IGI anterior/posterior pattern specification
GO:0014032 IGI neural crest cell development
GO:0016020 IEA membrane
GO:0020037 IEA heme binding
GO:0034653 ISA retinoic acid catabolic process
GO:0042573 IMP retinoic acid metabolic process
GO:0048384 IGI retinoic acid receptor signaling pathway
GO:0055114 IEA oxidation-reduction process
GO:0071300 IEP cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000224356 CYP26A1-002 protein_coding Homo_sapiens 0 2089
ENST00000371531 CYP26A1-001 protein_coding Homo_sapiens 0 1777
ENST00000622925 CYP26A1-006 retained_intron Homo_sapiens 0 750
ENST00000623162 CYP26A1-004 retained_intron Homo_sapiens 0 800
ENST00000624589 CYP26A1-003 nonsense_mediated_decay Homo_sapiens 0 1626
ENST00000625202 CYP26A1-005 retained_intron Homo_sapiens 0 353

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