C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 3, subunit A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025955 Eif3a-201 ENSMUSG00000024991 10090 - 19:60761116-60790693 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025955
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025955 19.287±6.80 20.316±1.52 26.398±2.78 43.562±26.77 15.604±4.57 12.241±1.90 14.575±0.91 15.542±1.83 31.045±18.70 22.943±3.01 19.763±3.92 45.606±54.06 115.667±96.43 30.810±14.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003K9 CIL_0003K9_0002 CGP 19:60755987-60790693
CIL_0005Y7 CIL_0005Y7_0002 CGP 19:60761116-60836227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001731 IEA formation of translation preinitiation complex
GO:0001732 IDA formation of cytoplasmic translation initiation complex
GO:0003743 IDA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005852 IDA eukaryotic translation initiation factor 3 complex
GO:0005856 IEA cytoskeleton
GO:0006446 IEA regulation of translational initiation
GO:0016020 IEA membrane
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0033290 IEA eukaryotic 48S preinitiation complex
GO:0044822 IEA poly(A) RNA binding
GO:0071541 IDA eukaryotic translation initiation factor 3 complex, eIF3m

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369144 EIF3A-001 protein_coding Homo_sapiens 0 4124
ENST00000462527 EIF3A-002 retained_intron Homo_sapiens 0 797
ENST00000541549 EIF3A-201 protein_coding Homo_sapiens 0 4157

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