C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: survival motor neuron domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025997 Smndc1-201 ENSMUSG00000025024 10090 - 19:53379214-53390573 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025997
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025997 3.045±0.38 3.967±1.47 9.820±1.21 6.234±0.32 4.121±0.77 2.341±0.76 2.663±0.79 3.044±1.02 3.829±2.83 4.359±0.94 6.116±0.69 3.111±2.04 18.138±4.44 3.667±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UR CIL_0000UR_0002 CGP 19:53379214-53542431

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0006915 IEA apoptotic process
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0045111 IEA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369592 SMNDC1-002 protein_coding Homo_sapiens 0 1013
ENST00000369603 SMNDC1-001 protein_coding Homo_sapiens 0 1188
ENST00000460483 SMNDC1-003 processed_transcript Homo_sapiens 0 732
ENST00000471297 SMNDC1-004 processed_transcript Homo_sapiens 0 431

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