C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stearoyl-coenzyme A desaturase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026220 Scd3-201 ENSMUSG00000025202 10090 + 19:44203288-44244016 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000026220
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000026220 0.166±0.03 0.089±0.07 0.043±0.03 0.275±0.04 0.575±0.33 0.077±0.03 0.041±0.03 0.039±0.02 0.031±0.03 0.038±0.02 0.059±0.03 0.138±0.06 0.155±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005E3 CIL_0005E3_0002 CGP 19:44147637-44244016

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004768 IEA stearoyl-CoA 9-desaturase activity
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0006633 IEA fatty acid biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370355 SCD-001 protein_coding Homo_sapiens 0 966
ENST00000455244 SCDP1-001 processed_pseudogene Homo_sapiens 0 885

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