C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005E3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107593-ENSG00000099194 CGP 9606 10:100288154-100364834
GeneTranscriptPositionBiotype
ENSG00000099194 (SCD)
stearoyl-CoA desaturase (delta-9-desaturase) 		ENST00000370355 (SCD-001) 100347124-100364834 protein_coding
ENSG00000107593 (PKD2L1)
polycystic kidney disease 2-like 1 		ENST00000318222 (PKD2L1-001) 100288154-100330486 protein_coding
ENST00000465680 (PKD2L1-002) 100288160-100329972 protein_coding
ENST00000528248 (PKD2L1-004) 100288396-100329940 nonsense_mediated_decay
ENST00000532547 (PKD2L1-003) 100299635-100330264 nonsense_mediated_decay
ENSG00000231188 (RP11-34D15.2)
 ENST00000429420 (RP11-34D15.2-001) 100335563-100346390 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0005E3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037578-ENSMUSG00000025202 CGP 10090 19:44147637-44244016
GeneTranscriptPositionBiotype
ENSMUSG00000025202 (Scd3)
stearoyl-coenzyme A desaturase 3 		ENSMUST00000026220 (Scd3-201) 44203288-44244016 protein_coding
ENSMUSG00000037578 (Pkd2l1)
polycystic kidney disease 2-like 1 		ENSMUST00000042026 (Pkd2l1-001) 44147637-44192442 protein_coding
ENSMUST00000161357 (Pkd2l1-002) 44147638-44192442 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005E3_0001ENSG00000099194ENST00000370355ENSG00000107593ENST00000318222ENST00000465680ENST00000528248ENST00000532547ENSG00000231188ENST00000429420CIL_0005E3_0002ENSMUSG00000025202ENSMUST00000026220ENSMUSG00000037578ENSMUST00000042026ENSMUST00000161357
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005E3_0001ENSG00000099194ENST00000370355ENSG00000107593ENST00000318222ENST00000465680ENST00000528248ENST00000532547ENSG00000231188ENST00000429420CIL_0005E3_0002ENSMUSG00000025202ENSMUST00000026220ENSMUSG00000037578ENSMUST00000042026ENSMUST00000161357
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000099194 ENST00000370355 62.220±0.00 13.743±0.00 N/A 206.879±143.10 921.563±890.76 62.315±49.79 6.454±3.86 99.238±95.51 140.027±41.51 31.622±2.08 3.559±3.29 78.320±32.93 12.329±2.75 29.791±9.70
ENSG00000107593 ENST00000318222 N/A N/A N/A 0.216±0.00 N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A 0.295±0.00
ENST00000465680 N/A 0.315±0.00 N/A N/A N/A 0.809±0.00 N/A N/A 0.178±0.00 N/A N/A 0.850±0.17 0.140±0.01 0.156±0.00
ENST00000528248 0.061±0.00 0.067±0.00 N/A 0.272±0.07 0.029±0.01 N/A 0.030±0.02 0.203±0.04 0.007±0.00 0.035±0.00 0.056±0.00 0.446±0.33 0.068±0.05 0.247±0.01
ENST00000532547 N/A N/A N/A 0.449±0.00 N/A N/A N/A N/A N/A 0.153±0.00 N/A N/A N/A N/A
ENSG00000231188 ENST00000429420 N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.198±0.06 N/A 1.843±1.19
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025202 ENSMUST00000026220 0.166±0.03 0.089±0.07 0.043±0.03 0.275±0.04 0.575±0.33 0.077±0.03 0.041±0.03 0.039±0.02 0.031±0.03 0.038±0.02 0.059±0.03 0.138±0.06 0.155±0.08 N/A
ENSMUSG00000037578 ENSMUST00000042026 0.017±0.00 0.055±0.03 0.013±0.01 0.154±0.00 0.036±0.02 0.051±0.02 N/A 0.008±0.00 0.006±0.00 0.031±0.01 0.014±0.00 0.095±0.04 0.264±0.22 2.501±1.52
ENSMUST00000161357 0.083±0.00 N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.148±0.00

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