C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) III (DNA directed) polypeptide A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026322 Polr3a-201 ENSMUSG00000025280 10090 - 14:24448694-24487046 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026322
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026322 3.336±1.27 1.061±0.26 3.987±0.12 4.257±2.06 1.885±0.40 2.001±0.48 1.834±0.30 3.174±0.45 2.020±0.96 2.468±0.34 1.556±0.37 3.684±1.54 5.197±1.29 2.687±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A5 CIL_0008A5_0002 VISTA 14:24316748-24920772
CIL_00084G CIL_00084G_0002 VISTA 14:24346755-24947117
CIL_00084G CIL_00084G_0003 VISTA 14:24347117-24947691
CIL_00084G CIL_00084G_0004 VISTA 14:24347693-24948412
CIL_00084G CIL_00084G_0005 VISTA 14:24348412-24949277
CIL_000809 CIL_000809_0002 VISTA 14:24349772-24952271
CIL_0007IB CIL_0007IB_0002 CGP 14:24448694-24496146

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0006383 IBA transcription from RNA polymerase III promoter
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0032549 IEA ribonucleoside binding
GO:0032728 IEA positive regulation of interferon-beta production
GO:0045087 IEA innate immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000105273 polr3a-201 protein_coding Danio_rerio 0 2536
ENST00000372371 POLR3A-002 protein_coding Homo_sapiens 0 5243
ENST00000472014 POLR3A-005 processed_transcript Homo_sapiens 0 595
ENST00000473588 POLR3A-004 nonsense_mediated_decay Homo_sapiens 0 588
ENST00000616246 POLR3A-201 protein_coding Homo_sapiens 0 891

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