C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trans-acting transcription factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026367 Sp4-201 ENSMUSG00000025323 10090 - 12:118234933-118301440 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026367
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026367 2.125±0.59 0.732±0.44 0.925±0.06 5.235±0.03 2.462±1.10 1.593±0.16 1.214±0.47 1.289±0.39 1.583±0.67 1.009±0.25 0.637±0.46 3.608±1.49 0.716±0.32 0.495±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008V0 CIL_0008V0_0002 VISTA 12:117689130-118289689
CIL_0007P2 CIL_0007P2_0003 UCNEbase 12:117806045-118844257
CIL_0008EX CIL_0008EX_0002 VISTA 12:118199993-118801065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0008016 IMP regulation of heart contraction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222584 SP4-001 protein_coding Homo_sapiens 0 4761
ENST00000432066 SP4-004 protein_coding Homo_sapiens 0 383
ENST00000440636 SP4-003 retained_intron Homo_sapiens 0 272
ENST00000448246 SP4-002 nonsense_mediated_decay Homo_sapiens 0 1943

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