C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinol dehydrogenase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026406 Rdh5-001 ENSMUSG00000025350 10090 - 10:128913593-128919297 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryENSMUST00000026406
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary
ENSMUST00000026406 8.777±1.64 8.030±2.13 10.469±0.65 9.717±1.25 4.905±0.13 10.558±1.48 17.597±9.10 5.499±0.86 9.962±0.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HO CIL_0007HO_0002 CGP 10:128913593-128924035

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005788 IDA endoplasmic reticulum lumen
GO:0007601 IEA visual perception
GO:0016020 IEA membrane
GO:0016491 IEA oxidoreductase activity
GO:0042572 IEA retinol metabolic process
GO:0044297 IEA cell body
GO:0050896 IEA response to stimulus
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257895 RDH5-001 protein_coding Homo_sapiens 0 1129
ENST00000257899 BLOC1S1-004 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000547072 RDH5-008 protein_coding Homo_sapiens 0 935
ENST00000548082 RDH5-002 protein_coding Homo_sapiens 0 1081
ENST00000548123 RDH5-007 nonsense_mediated_decay Homo_sapiens 0 268
ENST00000548486 RDH5-004 retained_intron Homo_sapiens 0 516
ENST00000550412 BLOC1S1-001 protein_coding Homo_sapiens 0 322
ENST00000550608 RDH5-003 retained_intron Homo_sapiens 0 686
ENST00000551444 RDH5-011 retained_intron Homo_sapiens 0 425
ENST00000551946 BLOC1S1-002 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000553187 RDH5-009 retained_intron Homo_sapiens 0 516

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