C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinol dehydrogenase 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025350 Rdh5 10090 - 10:128913593-128922888 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026406 Rdh5-001 128913593-128919297 protein_coding
  ENSMUST00000135161 Rdh5-007 128918420-128922888 protein_coding
  ENSMUST00000137747 Rdh5-006 128913817-128918052 protein_coding
  ENSMUST00000139217 Rdh5-005 128913846-128914623 retained_intron
  ENSMUST00000145616 Rdh5-004 128917924-128918705 protein_coding
  ENSMUST00000149961 Rdh5-003 128914225-128919272 protein_coding
  ENSMUST00000153935 Rdh5-002 128917301-128919297 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000026406ENSMUST00000135161ENSMUST00000153935
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000026406 8.777±1.64 8.030±2.13 10.469±0.65 9.717±1.25 4.905±0.13 10.558±1.48 17.597±9.10 5.499±0.86 9.962±0.93 N/A
ENSMUST00000135161 N/A N/A N/A N/A N/A N/A N/A N/A 13.330±0.34 6.141±0.00
ENSMUST00000153935 N/A N/A N/A N/A N/A N/A N/A N/A 6.150±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HO CIL_0007HO_0002 CGP 10:128913593-128924035

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005788 IDA endoplasmic reticulum lumen
GO:0007601 IEA visual perception
GO:0016020 IEA membrane
GO:0016491 IEA oxidoreductase activity
GO:0042572 IEA retinol metabolic process
GO:0044297 IEA cell body
GO:0050896 IEA response to stimulus
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008306 rdh5 retinol dehydrogenase 5 (11-cis/9-cis) protein_coding Danio_rerio
ENSG00000135437 RDH5 retinol dehydrogenase 5 (11-cis/9-cis) protein_coding Homo_sapiens

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