C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: advillin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026500 Avil-001 ENSMUSG00000025432 10090 + 10:127000709-127020994 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastMuscleOvaryPlacentaENSMUST00000026500
Transcript ID Adipose Breast Muscle Ovary Placenta
ENSMUST00000026500 0.961±0.01 0.190±0.00 2.382±0.83 0.942±0.00 0.980±0.06

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA:ISS actin binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0007015 ISS actin filament organization
GO:0010976 IDA positive regulation of neuron projection development
GO:0042995 ISS cell projection
GO:0043005 ISS neuron projection
GO:0051693 IEA actin filament capping
GO:0060271 ISS cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000248444 VIL1-001 protein_coding Homo_sapiens 4e-39 169
ENST00000257861 AVIL-001 protein_coding Homo_sapiens 0 2756
ENST00000392114 VIL1-002 protein_coding Homo_sapiens 1e-39 169
ENST00000548843 AVIL-003 retained_intron Homo_sapiens 0 1919
ENST00000549753 AVIL-009 retained_intron Homo_sapiens 0 442
ENST00000549851 AVIL-002 nonsense_mediated_decay Homo_sapiens 0 2700
ENST00000549994 AVIL-008 protein_coding Homo_sapiens 0 582
ENST00000550537 AVIL-006 retained_intron Homo_sapiens 0 832

Loading