C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal pentraxin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026670 Nptx1-001 ENSMUSG00000025582 10090 - 11:119538719-119547753 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026670
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026670 0.879±0.80 0.918±0.10 0.912±0.04 16.054±16.93 0.082±0.02 0.394±0.08 0.050±0.02 0.039±0.02 0.037±0.04 4.433±1.69 0.023±0.02 1.467±0.59 0.229±0.08 0.075±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042I CIL_00042I_0002 CGP 11:119491347-119547753
CIL_00042J CIL_00042J_0002 CGP 11:119538719-119899576

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005886 IEA plasma membrane
GO:0006839 IEA mitochondrial transport
GO:0031410 IEA cytoplasmic vesicle
GO:0035865 IEA cellular response to potassium ion
GO:0043005 IEA neuron projection
GO:0043653 IEA mitochondrial fragmentation involved in apoptotic process
GO:0046872 IEA metal ion binding
GO:0060385 IGI axonogenesis involved in innervation
GO:0071333 IEA cellular response to glucose stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306773 NPTX1-001 protein_coding Homo_sapiens 0 1951
ENST00000535681 NPTX1-002 retained_intron Homo_sapiens 0 1485
ENST00000571100 NPTX1-005 retained_intron Homo_sapiens 0 641
ENST00000575212 NPTX1-004 processed_transcript Homo_sapiens 0 340

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