C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: podocalyxin-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026698 Podxl-001 ENSMUSG00000025608 10090 - 6:31519488-31563981 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026698
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026698 21.792±2.88 25.087±15.14 11.531±0.99 5.985±1.51 19.694±10.25 12.718±3.04 20.239±2.17 67.030±3.74 3.778±3.16 79.037±42.93 6.926±1.90 26.614±8.24 42.581±15.88 0.914±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024O CIL_00024O_0003 CGP 6:31398735-31563981

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 ISS ruffle
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005737 ISS cytoplasm
GO:0005886 ISS plasma membrane
GO:0007155 IEA cell adhesion
GO:0007162 ISS negative regulation of cell adhesion
GO:0016021 IEA integral component of membrane
GO:0016324 IDA apical plasma membrane
GO:0016477 IMP cell migration
GO:0022408 IMP negative regulation of cell-cell adhesion
GO:0030027 ISS lamellipodium
GO:0030175 ISS filopodium
GO:0030335 ISS positive regulation of cell migration
GO:0031528 IDA microvillus membrane
GO:0032534 IDA regulation of microvillus assembly
GO:0033634 ISS positive regulation of cell-cell adhesion mediated by integrin
GO:0036057 ISS slit diaphragm
GO:0044297 IEA cell body
GO:0050900 IMP leukocyte migration
GO:0070062 IEA extracellular vesicular exosome
GO:0072015 ISS glomerular visceral epithelial cell development
GO:0072175 ISS epithelial tube formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322985 PODXL-001 protein_coding Homo_sapiens 0 529
ENST00000378555 PODXL-005 protein_coding Homo_sapiens 0 529
ENST00000446198 PODXL-003 nonsense_mediated_decay Homo_sapiens 0 568
ENST00000484346 PODXL-009 retained_intron Homo_sapiens 0 534
ENST00000487965 PODXL-007 retained_intron Homo_sapiens 5.60519e-45 185
ENST00000490761 PODXL-008 retained_intron Homo_sapiens 0 200

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